Commits for hiram

v293_base to v294_preview (2013-12-09 to 2013-12-16) v294

• correctly avoiding problems during parallel make and remove useless (sub shell) operations
  • src/hg/encode3/encodeDataWarehouse/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/makefile - lines changed 20, context: html, text, full: html, text
• add ann to Cc: line in Code review reminder email refs #12191
  • src/utils/qa/weeklybld/doNewBranch.csh - lines changed 1, context: html, text, full: html, text
• clean up note/using messages for all ensGene v74 db releases refs #12288
  • src/hg/makeDb/schema/all.joiner - lines changed 9, context: html, text, full: html, text
• avoid compile errors when USE_SSL=0 refs #12254
  • src/lib/hmac.c - lines changed 2, context: html, text, full: html, text
• restore all use cases for daily build, they do work OK refs #12254
  • src/utils/qa/weeklybld/buildOneUseCase - lines changed 3, context: html, text, full: html, text
  • src/utils/qa/weeklybld/buildWithUseCases - lines changed 11, context: html, text, full: html, text
• better comments requested refs #12254
  • src/product/scripts/dirStatsFromFind.pl - lines changed 3, context: html, text, full: html, text
• correctly setting the mail command refs #12254
  • src/product/scripts/trashCleanMonitor.sh - lines changed 5, context: html, text, full: html, text
• clarify usage message refs #12254
  • src/product/scripts/trashCleaner.bash - lines changed 5, context: html, text, full: html, text
• clean up note/using messages for all ensGene v74 db releases refs #12288
  • src/hg/makeDb/schema/all.joiner - lines changed 6, context: html, text, full: html, text
• allow parsing of settings file from lastz_D tuning operations refs #12260
  • src/lib/axt.c - lines changed 77, context: html, text, full: html, text
• record procedures from v74 update refs #12288
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 1313, context: html, text, full: html, text
• restore fetch of GTF and MySQL files refs #12288
  • src/hg/utils/automation/findEnsFtpNames.sh - lines changed 5, context: html, text, full: html, text
• v294 preview1 refs #12191
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text