Commits for max

v294_preview to v294_preview2 (2013-12-16 to 2014-01-06) v294

• removing indiv sequences link, rm #12212
  • src/hg/hgc/pubs.c - lines changed 5, context: html, text, full: html, text
• hgMirror is a CGI to make partial mirrors and VMs easier to setup. Itpresents the list of tracks, allows the user to select a few, prepares
  a script with udr download commands and runs them. As it requires a lot
  of write permissions and can do harm (mysql directory, gbdb directory),
  it currently does show sizes on hgwdev, but cannot write anything.
  I didn't make it part of the default "make cgi" target.
  
  • src/hg/hgMirror/hgMirror - lines changed 902, context: html, text, full: html, text
  • src/hg/hgMirror/makefile - lines changed 19, context: html, text, full: html, text
• As suggested by Hiram, inversing the strategy for table name checks:First try the full table name, then the split table name. All current
  assemblies use normal, non-split tables so this saves some mysql
  queries (and saves some time in the browser box)
  
  • src/hg/lib/hdb.c - lines changed 15, context: html, text, full: html, text
• fixing slightly weird code in pubs track color reading
  • src/hg/hgTracks/pubsTracks.c - lines changed 3, context: html, text, full: html, text
• replacing a query with the more apprpriate function call (saves somelittle time in the browser box, as hdb can use the table name cache)
  
  • src/hg/hgTracks/factorSource.c - lines changed 2, context: html, text, full: html, text
• when I changed the makeTableList command, forgot to check in the sqltable schema for its table
  
  • src/hg/lib/tableList.sql - lines changed 11, context: html, text, full: html, text
• always copy one small encode table
  • src/hg/hgMirror/hgMirror - lines changed 1, context: html, text, full: html, text