File Changes for hiram

v295_preview2 to v295_base (2014-01-27 to 2014-02-03) v295

• src/hg/inc/versionInfo.h
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    New version number v295
• src/hg/makeDb/doc/hg38.txt
  • lines changed 10, context: html, text, full: html, text
    load non-bridged contig locations as a track refs #11681
  • lines changed 1, context: html, text, full: html, text
    better default position centered on ABO gene refs #11681
• src/hg/makeDb/trackDb/human/hg38/altSequences.ra
  • lines changed 9, context: html, text, full: html, text
    better set up for the alternate mapping track refs #11681
  • lines changed 1, context: html, text, full: html, text
    trying priorities all set to zero, and start the chain net packaging early refs #11681
• src/hg/makeDb/trackDb/human/hg38/chainNetPrimate.ra
  • lines changed 215, context: html, text, full: html, text
    trying priorities all set to zero, and start the chain net packaging early refs #11681
• src/hg/makeDb/trackDb/human/hg38/contigAlignmentSegments.html
  • lines changed 5, context: html, text, full: html, text
    adding contigAlignmentSegments track refs #11681
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 50, context: html, text, full: html, text
    trying priorities all set to zero, and start the chain net packaging early refs #11681
  • lines changed 8, context: html, text, full: html, text
    adding contigAlignmentSegments track refs #11681
• src/hg/utils/automation/blastz-run-ucsc
  • lines changed 2, context: html, text, full: html, text
    fixed lavToPsl and can now use 2bit files for target bits refs #11681
• src/hg/utils/automation/doBlastzChainNet.pl
  • lines changed 9, context: html, text, full: html, text
    fixed lavToPsl and can now use 2bit files for target bits refs #11681
• src/hg/utils/automation/doGenscan.pl
  • lines changed 4, context: html, text, full: html, text
    better to do the bigBed conversion at load time refs #11681
• src/hg/utils/automation/makePushQSql.pl
  • lines changed 1, context: html, text, full: html, text
    new default location for bbi files refs #11681
• src/inc/common.mk
  • lines changed 5, context: html, text, full: html, text
    avoid an extra leading slash when DESTDIR is empty for DESTBINDIR refs #12106
• src/userApps/README
  • lines changed 6, context: html, text, full: html, text
    mention stdin,stdout,stderr for kent command arguments, the first time ever in any README in the source tree refs #9149
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v295 final build refs #12352
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 1, context: html, text, full: html, text
    add steve to email list refs #12352
• src/utils/qa/weeklybld/doNewReview2.csh
  • lines changed 1, context: html, text, full: html, text
    add steve to email list refs #12352doNewBranch.csh