Commits for hiram

v295_preview2 to v295_base (2014-01-27 to 2014-02-03) v295

• add steve to email list refs #12352doNewBranch.csh
  • src/utils/qa/weeklybld/doNewReview2.csh - lines changed 1, context: html, text, full: html, text
• add steve to email list refs #12352
  • src/utils/qa/weeklybld/doNewBranch.csh - lines changed 1, context: html, text, full: html, text
• better set up for the alternate mapping track refs #11681
  • src/hg/makeDb/trackDb/human/hg38/altSequences.ra - lines changed 9, context: html, text, full: html, text
• mention stdin,stdout,stderr for kent command arguments, the first time ever in any README in the source tree refs #9149
  • src/userApps/README - lines changed 6, context: html, text, full: html, text
• trying priorities all set to zero, and start the chain net packaging early refs #11681
  • src/hg/makeDb/trackDb/human/hg38/altSequences.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/chainNetPrimate.ra - lines changed 215, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 50, context: html, text, full: html, text
• avoid an extra leading slash when DESTDIR is empty for DESTBINDIR refs #12106
  • src/inc/common.mk - lines changed 5, context: html, text, full: html, text
• load non-bridged contig locations as a track refs #11681
  • src/hg/makeDb/doc/hg38.txt - lines changed 10, context: html, text, full: html, text
• adding contigAlignmentSegments track refs #11681
  • src/hg/makeDb/trackDb/human/hg38/contigAlignmentSegments.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 8, context: html, text, full: html, text
• fixed lavToPsl and can now use 2bit files for target bits refs #11681
  • src/hg/utils/automation/blastz-run-ucsc - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 9, context: html, text, full: html, text
• better to do the bigBed conversion at load time refs #11681
  • src/hg/utils/automation/doGenscan.pl - lines changed 4, context: html, text, full: html, text
• new default location for bbi files refs #11681
  • src/hg/utils/automation/makePushQSql.pl - lines changed 1, context: html, text, full: html, text
• better default position centered on ABO gene refs #11681
  • src/hg/makeDb/doc/hg38.txt - lines changed 1, context: html, text, full: html, text
• v295 final build refs #12352
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v295
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text