File Changes for hiram

v298_base to v299_preview (2014-04-07 to 2014-04-14) v299

• src/hg/makeDb/doc/criGri1.txt
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    in the pushQ 007215 refs #6506
• src/hg/makeDb/doc/eriEur2.txt
  • lines changed 1704, context: html, text, full: html, text
    in the pushQ 007216 refs #9419
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added criGri1 to daily hgwdev build refs #6506
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 19, context: html, text, full: html, text
    adding criGri1 Chinese hamster refs #6506
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    Added criGri1 to daily hgwdev build refs #6506
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    adding criGri1 Chinese hamster refs #6506
• src/hg/makeDb/schema/all.joiner
  • lines changed 15, context: html, text, full: html, text
    adding rules for criGri1 refs #6506
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    must also specify release alpha in the sub-track of a super track alpha release refs #12803
• src/hg/makeDb/trackDb/trackDb.ra
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    must also specify release alpha in the sub-track of a super track alpha release refs #12803
  • lines changed 18, context: html, text, full: html, text
    adding rmskUpdate track for refs #12522 investigation
• src/hg/utils/phyloTrees/120way.commonNames.nh
  • lines changed 1, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/120way.scientificNames.nh
  • lines changed 1, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 1, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/122way.commonNames.nh
  • lines changed 122, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 1, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/122way.nh
  • lines changed 122, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
• src/hg/utils/phyloTrees/122way.scientificNames.nh
  • lines changed 122, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 1, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/123way.commonNames.nh
  • lines changed 123, context: html, text, full: html, text
    adding Japanese eel angJap1 refs @10272
  • lines changed 4, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/123way.nh
  • lines changed 123, context: html, text, full: html, text
    adding Japanese eel angJap1 refs @10272
• src/hg/utils/phyloTrees/123way.scientificNames.nh
  • lines changed 123, context: html, text, full: html, text
    adding Japanese eel angJap1 refs @10272
  • lines changed 4, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/129way.commonNames.nh
  • lines changed 129, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/129way.nh
  • lines changed 129, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/129way.scientificNames.nh
  • lines changed 129, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/commonNames.sh
  • lines changed 2, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 2, context: html, text, full: html, text
    adding Japanese eel angJap1 refs @10272
  • lines changed 8, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab
  • lines changed 10, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 1, context: html, text, full: html, text
    adding angJap1 Japanese eel Anguilla japonica refs #10272
  • lines changed 7, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
  • lines changed 2, context: html, text, full: html, text
    moving chrPic2 up one refs #10272
• src/hg/utils/phyloTrees/makefile
  • lines changed 7, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 7, context: html, text, full: html, text
    adding Japanese eel angJap1 refs @10272
  • lines changed 7, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/placentals.txt
  • lines changed 8, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/scientificNames.sh
  • lines changed 2, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 1, context: html, text, full: html, text
    adding Japanese eel angJap1 refs @10272
  • lines changed 9, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/hg/utils/phyloTrees/vertebrates.txt
  • lines changed 12, context: html, text, full: html, text
    adding serCan1 cynSem1 refs #10272
  • lines changed 3, context: html, text, full: html, text
    adding Japanese eel angJap1 refs @10272
  • lines changed 18, context: html, text, full: html, text
    adding genomes to catch up with NCBI FTP site
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v299 preview1 refs #13064