File Changes for kent

v299_base to v300_preview (2014-04-28 to 2014-05-05) v300

• src/hg/encode3/eap/eapAddStep/eapAddStep.c
  • lines changed 3, context: html, text, full: html, text
    Adjusting sum_bigWig and replicated_hotspot steps.
• src/hg/encode3/eap/eapFreen/eapFreen.c
  • lines changed 1, context: html, text, full: html, text
    Renaming longList structure and module to longToList.
• src/hg/encode3/eap/eapMetaSync/eapMetaSync.c
  • lines changed 2, context: html, text, full: html, text
    Turning uglyf to verbose, and updating out of date comment per Tim's code review.
• src/hg/encode3/eap/eapToHub/eapToHub.c
  • lines changed 1121, context: html, text, full: html, text
    Adjusting eapToHub to new location.
• src/hg/encode3/eap/eapUpdateSoftware/eapUpdateSoftware.c
  • lines changed 1, context: html, text, full: html, text
    Changing priority to an enum.
• src/hg/encode3/eap/inc/eapGraph.h
  • lines changed 3, context: html, text, full: html, text
    Renaming longList structure and module to longToList.
• src/hg/encode3/eap/lib/eapGraph.c
  • lines changed 20, context: html, text, full: html, text
    Renaming longList structure and module to longToList.
• src/hg/encode3/eap/oneShot/diffRepVsCrossEn/README
  • lines changed 6, context: html, text, full: html, text
    Adding data behind AWG presentation slide comparing IDR metrics to crossEnrichments.
  • lines changed 5, context: html, text, full: html, text
    Improving documentation in README, updating table from Anshul.
• src/hg/encode3/eap/oneShot/diffRepVsCrossEn/fromAnshul.tab
  • lines changed 1502, context: html, text, full: html, text
    Adding data behind AWG presentation slide comparing IDR metrics to crossEnrichments.
  • lines changed 2, context: html, text, full: html, text
    Improving documentation in README, updating table from Anshul.
• src/hg/encode3/eap/oneShot/diffRepVsCrossEn/fromPortal.tab
  • lines changed 1052, context: html, text, full: html, text
    Adding data behind AWG presentation slide comparing IDR metrics to crossEnrichments.
• src/hg/encode3/eap/oneShot/eapToHub/eapToHub.c
  • lines changed 1121, context: html, text, full: html, text
    Adjusting eapToHub to new location.
• src/hg/encode3/eap/oneShot/eapToHub/makefile
  • lines changed 4, context: html, text, full: html, text
    Adjusting eapToHub to new location.
• src/hg/encode3/encodeDataWarehouse/oneShot/edwFakeBiosample/edwFakeBiosample.c
  • lines changed 14, context: html, text, full: html, text
    Added -json option to aid debugging when Stanford changes output.
• src/hg/encode3/encodeDataWarehouse/oneShot/rsyncEdwExpDataType/rsyncEdwExpDataType.c
  • lines changed 13, context: html, text, full: html, text
    Removing URL command line parameter since it is in source code now. Adding 'limit=all' to the URL since it's now required to get more than the first 25 experiments in response. Adding a new size range to the shortRna section.
• src/hg/encode3/encodeDataWarehouse/utils/edwBamRemoveChrom/edwBamRemoveChrom.c
  • lines changed 91, context: html, text, full: html, text
    Wrote little utility mostly to remove chrM for DNAse.
• src/hg/encode3/encodeDataWarehouse/utils/edwBamRemoveChrom/makefile
  • lines changed 3, context: html, text, full: html, text
    Wrote little utility mostly to remove chrM for DNAse.
• src/inc/longList.h
  • lines changed 52, context: html, text, full: html, text
    Renaming longList structure and module to longToList.
• src/inc/longToList.h
  • lines changed 52, context: html, text, full: html, text
    Renaming longList structure and module to longToList.
• src/lib/jsonWrite.c
  • lines changed 6, context: html, text, full: html, text
    Removed out of date part of comment.
• src/lib/longList.c
  • lines changed 100, context: html, text, full: html, text
    Renaming longList structure and module to longToList.
• src/lib/longToList.c
  • lines changed 100, context: html, text, full: html, text
    Renaming longList structure and module to longToList.
• src/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Renaming longList to longToList.
• src/makefile
  • lines changed 1, context: html, text, full: html, text
    Adding parasol libraries to those made with make libs.