Commits for kent
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v299_base to v300_preview (2014-04-28 to 2014-05-05) v300
- Adding parasol libraries to those made with make libs.
- Changing priority to an enum.
- src/hg/encode3/eap/eapUpdateSoftware/eapUpdateSoftware.c - lines changed 1, context: html, text, full: html, text
- Renaming longList structure and module to longToList.
- src/hg/encode3/eap/eapFreen/eapFreen.c - lines changed 1, context: html, text, full: html, text
- src/hg/encode3/eap/inc/eapGraph.h - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/eap/lib/eapGraph.c - lines changed 20, context: html, text, full: html, text
- Adjusting eapToHub to new location.
- src/hg/encode3/eap/eapToHub/eapToHub.c - lines changed 1121, context: html, text, full: html, text
- src/hg/encode3/eap/oneShot/eapToHub/eapToHub.c - lines changed 1121, context: html, text, full: html, text
- src/hg/encode3/eap/oneShot/eapToHub/makefile - lines changed 4, context: html, text, full: html, text
- Adding data behind AWG presentation slide comparing IDR metrics to crossEnrichments.
- src/hg/encode3/eap/oneShot/diffRepVsCrossEn/README - lines changed 6, context: html, text, full: html, text
- src/hg/encode3/eap/oneShot/diffRepVsCrossEn/fromAnshul.tab - lines changed 1502, context: html, text, full: html, text
- src/hg/encode3/eap/oneShot/diffRepVsCrossEn/fromPortal.tab - lines changed 1052, context: html, text, full: html, text
- Wrote little utility mostly to remove chrM for DNAse.
- src/hg/encode3/encodeDataWarehouse/utils/edwBamRemoveChrom/edwBamRemoveChrom.c - lines changed 91, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/utils/edwBamRemoveChrom/makefile - lines changed 3, context: html, text, full: html, text
- Removed out of date part of comment.
- Renaming longList to longToList.
- Adjusting sum_bigWig and replicated_hotspot steps.
- src/hg/encode3/eap/eapAddStep/eapAddStep.c - lines changed 3, context: html, text, full: html, text
- Turning uglyf to verbose, and updating out of date comment per Tim's code review.
- src/hg/encode3/eap/eapMetaSync/eapMetaSync.c - lines changed 2, context: html, text, full: html, text
- Improving documentation in README, updating table from Anshul.
- src/hg/encode3/eap/oneShot/diffRepVsCrossEn/README - lines changed 5, context: html, text, full: html, text
- src/hg/encode3/eap/oneShot/diffRepVsCrossEn/fromAnshul.tab - lines changed 2, context: html, text, full: html, text
- Added -json option to aid debugging when Stanford changes output.
- src/hg/encode3/encodeDataWarehouse/oneShot/edwFakeBiosample/edwFakeBiosample.c - lines changed 14, context: html, text, full: html, text
- Removing URL command line parameter since it is in source code now. Adding 'limit=all' to the URL since it's now required to get more than the first 25 experiments in response. Adding a new size range to the shortRna section.
- src/hg/encode3/encodeDataWarehouse/oneShot/rsyncEdwExpDataType/rsyncEdwExpDataType.c - lines changed 13, context: html, text, full: html, text
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