File Changes for kate

v302_preview2 to v302_base (2014-06-23 to 2014-06-30) v302

• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    Add filtering by source count (pick lineage-specific vs. ubiquitous sites). refs #13230
  • lines changed 1, context: html, text, full: html, text
    Revert to previous label; Tim counsels alternate approach
  • lines changed 7, context: html, text, full: html, text
    Suppress spurious 'Minimum' prefix to UI filter box label when using a range filter. refs #13230
• src/hg/makeDb/doc/encodeAwgHg19.txt
  • lines changed 16, context: html, text, full: html, text
    Changes to doc and labels after review by Bob Thurman. Fix to loader program. Log transform scores for better spectrum display. refs #13230
  • lines changed 14, context: html, text, full: html, text
    Fix cell types to match ENCODE controlled vocab. refs #13230
• src/hg/makeDb/doc/encodeRegHg19.txt
  • lines changed 36, context: html, text, full: html, text
    V3 of DNase clusters track. Restores lineage-specific clusters. refs #13490
• src/hg/makeDb/hgBedSources/hgBedSources.c
  • lines changed 2, context: html, text, full: html, text
    Changes to doc and labels after review by Bob Thurman. Fix to loader program. Log transform scores for better spectrum display. refs #13230
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 3, context: html, text, full: html, text
    Fix controlIds in HAIB TFBS metadata. refs #13476
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegDnaseClustered.ra
  • lines changed 8, context: html, text, full: html, text
    Adding metadata for V3 DNase clusters. refs #13490
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwg.ra
  • lines changed 3, context: html, text, full: html, text
    Add filtering by source count (pick lineage-specific vs. ubiquitous sites). refs #13230
  • lines changed 4, context: html, text, full: html, text
    Changes to doc and labels after review by Bob Thurman. Fix to loader program. Log transform scores for better spectrum display. refs #13230
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseCombinedSites.html
  • lines changed 64, context: html, text, full: html, text
    Changes to doc and labels after review by Bob Thurman. Fix to loader program. Log transform scores for better spectrum display. refs #13230
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseMasterSites.html
  • lines changed 91, context: html, text, full: html, text
    Changes to doc and labels after review by Bob Thurman. Fix to loader program. Log transform scores for better spectrum display. refs #13230
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra
  • lines changed 29, context: html, text, full: html, text
    V3 of DNase clusters track. Restores lineage-specific clusters. refs #13490
  • lines changed 1, context: html, text, full: html, text
    refs #13490
  • lines changed 24, context: html, text, full: html, text
    Add V3 update of DNase Clusters. refs #13490
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHist.ra
  • lines changed 15, context: html, text, full: html, text
    Fixed filenames in two fastq tarballs. refs #13404