Commits for kate

v302_preview2 to v302_base (2014-06-23 to 2014-06-30) v302

• Add filtering by source count (pick lineage-specific vs. ubiquitous sites). refs #13230
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwg.ra - lines changed 3, context: html, text, full: html, text
• Fix controlIds in HAIB TFBS metadata. refs #13476
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 3, context: html, text, full: html, text
• Fixed filenames in two fastq tarballs. refs #13404
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHist.ra - lines changed 15, context: html, text, full: html, text
• Adding metadata for V3 DNase clusters. refs #13490
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegDnaseClustered.ra - lines changed 8, context: html, text, full: html, text
• V3 of DNase clusters track. Restores lineage-specific clusters. refs #13490
  • src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 36, context: html, text, full: html, text
• V3 of DNase clusters track. Restores lineage-specific clusters. refs #13490
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 29, context: html, text, full: html, text
• refs #13490
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' into dhs2
• Revert to previous label; Tim counsels alternate approach
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text
• Changes to doc and labels after review by Bob Thurman. Fix to loader program. Log transform scores for better spectrum display. refs #13230
  • src/hg/makeDb/doc/encodeAwgHg19.txt - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/hgBedSources/hgBedSources.c - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwg.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseCombinedSites.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseMasterSites.html - lines changed 91, context: html, text, full: html, text
• Suppress spurious 'Minimum' prefix to UI filter box label when using a range filter. refs #13230
  • src/hg/lib/hui.c - lines changed 7, context: html, text, full: html, text
• Add V3 update of DNase Clusters. refs #13490
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 24, context: html, text, full: html, text
• Fix cell types to match ENCODE controlled vocab. refs #13230
  • src/hg/makeDb/doc/encodeAwgHg19.txt - lines changed 14, context: html, text, full: html, text