Commits for kent

v301_base to v302_preview (2014-06-09 to 2014-06-16) v302

• Doing enrichment calcs straight up bigBed types.
  • src/hg/encode3/encodeDataWarehouse/edwMakeEnrichments/edwMakeEnrichments.c - lines changed 1, context: html, text, full: html, text
• Adding 'bed_' type formats.
  • src/hg/encode3/encodeDataWarehouse/edwMakeReplicateQa/edwMakeReplicateQa.c - lines changed 55, context: html, text, full: html, text
• Freen finds a lineFileSeek bug.
  • src/hg/oneShot/freen/freen.c - lines changed 37, context: html, text, full: html, text
• Removing an optimization for short seeks in lineFileSeek that was breaking in most cases.
  • src/lib/linefile.c - lines changed 8, context: html, text, full: html, text
• Your basic command line undeprecator.
  • src/hg/encode3/encodeDataWarehouse/edwUndeprecate/edwUndeprecate.c - lines changed 57, context: html, text, full: html, text
• Demoing autoSql
  • src/hg/oneShot/freen/freen.c - lines changed 28, context: html, text, full: html, text
• Fixing merge conflict
• Fixing signedness warning/error
  • src/lib/fq.c - lines changed 1, context: html, text, full: html, text
• Fixing signedness.
  • src/hg/encode3/encodeDataWarehouse/utils/edwSolexaToSangerFastq/edwSolexaToSangerFastq.c - lines changed 4, context: html, text, full: html, text