All File Changes

v303_preview2 to v303_base (2014-07-14 to 2014-07-21) v303

• src/ameme/ameme.c
  • lines changed 5, context: html, text, full: html, text
    Making Improbizer take more sequences, and warn when you exceed limit.
• src/browserbox/README.txt
  • lines changed 10, context: html, text, full: html, text
    Adding scripts for Windows/OSX that create the network name "genome.ucsc.local", rm #12843
• src/browserbox/clientInstall/addLocalMac.applescript
  • lines changed 46, context: html, text, full: html, text
    Adding scripts for Windows/OSX that create the network name "genome.ucsc.local", rm #12843
• src/browserbox/clientInstall/addLocalWindows.vbs
  • lines changed 49, context: html, text, full: html, text
    Adding scripts for Windows/OSX that create the network name "genome.ucsc.local", rm #12843
  • lines changed 0, context: html, text, full: html, text
    changing line endings so git doesn't complain anymore
• src/hg/encode3/eap/eapSchedule/eapSchedule.c
  • lines changed 17, context: html, text, full: html, text
    Making missing ChIP control skip file rather than abort program.
• src/hg/encode3/encodeDataWarehouse/inc/edwLib.h
  • lines changed 1, context: html, text, full: html, text
    Fixing typo in comment.
• src/hg/encode3/encodeDataWarehouse/lib/edwLib.c
  • lines changed 1, context: html, text, full: html, text
    Fixing typo in comment.
• src/hg/encode3/encodeDataWarehouse/lib/resetEdw
  • lines changed 1, context: html, text, full: html, text
    Removing dm6 as contamination target since dm3 is good enough for this purpose.
• src/hg/expData/expData.c
  • lines changed 63, context: html, text, full: html, text
    Added a new output which is a json formatted for hierarchical d3 visualizations
• src/hg/expData/makefile
  • lines changed 3, context: html, text, full: html, text
    Forgot to commit the make file!
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 8, context: html, text, full: html, text
    unlisted hubs are not listed if they aren't connected
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    Removing udcTimeout from cart since it can cause permanent delays if there.
• src/hg/hgTracks/joinedRmskTrack.c
  • lines changed 566, context: html, text, full: html, text
    updating code from Robert refs #9741
• src/hg/hgTracks/simpleTracks.c
  • lines changed 3, context: html, text, full: html, text
    add jRepeatMethods refs #9741
• src/hg/hgc/hgc.c
  • lines changed 1, context: html, text, full: html, text
    Remove unnecessary else statement from genomicSuperDups section, refs #13171
  • lines changed 2, context: html, text, full: html, text
    Add track description for DNAse cluster update. refs #13490
• src/hg/hgc/joinedRmskClick.c
  • lines changed 410, context: html, text, full: html, text
    updating code from Robert refs #9741
• src/hg/hgc/makefile
  • lines changed 2, context: html, text, full: html, text
    updating code from Robert refs #9741
• src/hg/htdocs/ENCODE/about.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/aboutScaleup.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/antibodies.html
  • lines changed 2, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/cellTypes.html
  • lines changed 4, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/cellTypesMouse.html
  • lines changed 2, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/contributors_pilot.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/credits.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/dataPlansMouse.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/dir.hg16.html
  • lines changed 45, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/dir.hg17.html
  • lines changed 45, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/dir.hg18.html
  • lines changed 45, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/dir2.hg16.html
  • lines changed 45, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/dir2.hg17.html
  • lines changed 46, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/dir2.hg18.html
  • lines changed 46, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 3, context: html, text, full: html, text
    Adding a line to the ENCODE downloads page to help direct users to further ENCODE resources, per consortium feedback
• src/hg/htdocs/ENCODE/encodeTools.html
  • lines changed 9, context: html, text, full: html, text
    Adding a ENCODE publication PMID that was previously in review to encode tools page
• src/hg/htdocs/ENCODE/fileFormats.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/index.html
  • lines changed 68, context: html, text, full: html, text
    Add section on ENCODE 3 data release to News section of ENCODE portal
  • lines changed 1, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
  • lines changed 11, context: html, text, full: html, text
    Only dropping spacing down to under 100 characters on news announcement ENCODE
  • lines changed 2, context: html, text, full: html, text
    Updating ENCODE announcement with two small changes, and copying that to the newsarch page
• src/hg/htdocs/ENCODE/news_archive.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/newsarch.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
  • lines changed 13, context: html, text, full: html, text
    fixing more errors in links in static pages
  • lines changed 59, context: html, text, full: html, text
    Updating ENCODE announcement with two small changes, and copying that to the newsarch page
• src/hg/htdocs/ENCODE/otherTerms.html
  • lines changed 16, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/pilot.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/pubsEncode.html
  • lines changed 14, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
• src/hg/htdocs/ENCODE/pubsOther.html
  • lines changed 2, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
• src/hg/htdocs/ENCODE/qualityMetrics.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
• src/hg/htdocs/ENCODE/regions.html
  • lines changed 1, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
• src/hg/htdocs/ENCODE/regions_build33.html
  • lines changed 1, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
• src/hg/htdocs/ENCODE/regions_build34.html
  • lines changed 1, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
• src/hg/htdocs/ENCODE/releaseLog.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
  • lines changed 208, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/submission.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/terms_pilot.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/ENCODE/trackStatus.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/FAQ/FAQcustom.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
  • lines changed 4, context: html, text, full: html, text
    fixing more errors in links in static pages
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 2, context: html, text, full: html, text
    Added minor doc changes from code review, refs #13535
  • lines changed 2, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/FAQ/FAQlink.html
  • lines changed 4, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 4, context: html, text, full: html, text
    Modified static docs for ochPri3 and sorAra2 release (redmine #9347,9348)
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/FAQ/FAQtracks.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/Neandertal/index.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
• src/hg/htdocs/contacts.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links caused by leading space after = sign in url
  • lines changed 2, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/goldenPath/certificate.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
• src/hg/htdocs/goldenPath/certificates/certificate_hg15.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
• src/hg/htdocs/goldenPath/certificates/certificate_hg16.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
• src/hg/htdocs/goldenPath/credits.html
  • lines changed 6, context: html, text, full: html, text
    Modified static docs for ochPri3 and sorAra2 release (redmine #9347,9348)
  • lines changed 2, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
  • lines changed 68, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/goldenPath/help/bigWig.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links caused by leading space after = sign in url
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 2, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
  • lines changed 2, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
• src/hg/htdocs/goldenPath/help/hgRegMotifHelp.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links caused by leading space after = sign in url
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
• src/hg/htdocs/goldenPath/help/hgUserPsl.html
  • lines changed 3, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
• src/hg/htdocs/goldenPath/help/hgVaiHelpText.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/goldenPath/help/mysql.html
  • lines changed 12, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
• src/hg/htdocs/goldenPath/help/oligoMatch.html
  • lines changed 3, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 58, context: html, text, full: html, text
    Modified static docs for ochPri3 and sorAra2 release (redmine #9347,9348)
  • lines changed 5, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links caused by leading space after = sign in url
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
  • lines changed 16, context: html, text, full: html, text
    fixing more errors in links in static pages
  • lines changed 2, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, found trailing slash in cgi path
• src/hg/htdocs/goldenPath/pubs.html
  • lines changed 3, context: html, text, full: html, text
    modified format per code review. probably still not right
  • lines changed 4, context: html, text, full: html, text
    tweaked reference
  • lines changed 2, context: html, text, full: html, text
    fixing static html broken links caused by bad line breaks on long urls, or missing endquotes.
  • lines changed 1, context: html, text, full: html, text
    fixed link to point to correct paper
• src/hg/htdocs/goldenPath/releaseLog.html
  • lines changed 0, context: html, text, full: html, text
    fixing static html broken links containing illegal space chars
  • lines changed 556, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/index.html
  • lines changed 1, context: html, text, full: html, text
    fixing more errors in links in static pages, often found real file in a different directory or slightly differnt name.
• src/hg/htdocs/indexIntro.html
  • lines changed 6, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/htdocs/indexNews.html
  • lines changed 83, context: html, text, full: html, text
    Modified static docs for ochPri3 and sorAra2 release (redmine #9347,9348)
• src/hg/htdocs/training.html
  • lines changed 17, context: html, text, full: html, text
    fixing more errors in links in static pages
• src/hg/inc/trackHub.h
  • lines changed 1, context: html, text, full: html, text
    impose sorting on orderKey for assembly track hubs
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v303
• src/hg/lib/hdb.c
  • lines changed 1, context: html, text, full: html, text
    impose sorting on orderKey in trackHub assemblies
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    refactor some source so not every makefile has to include HALLIBS
• src/hg/lib/trackHub.c
  • lines changed 176, context: html, text, full: html, text
    refactor some source so not every makefile has to include HALLIBS
  • lines changed 18, context: html, text, full: html, text
    impose sorting on orderKey in trackHub assemblies
• src/hg/lib/trackHubCheck.c
  • lines changed 203, context: html, text, full: html, text
    refactor some source so not every makefile has to include HALLIBS
• src/hg/lib/web.c
  • lines changed 3, context: html, text, full: html, text
    fixing links for non-top-level sites
• src/hg/makeDb/doc/dm6.txt
  • lines changed 182, context: html, text, full: html, text
    Tidy up dm6.txt, remove skipped tasks section.
• src/hg/makeDb/doc/dp4.txt
  • lines changed 141, context: html, text, full: html, text
    running up droPer1 lastz and selfChain for Katie Pollard request
• src/hg/makeDb/doc/droPer1.txt
  • lines changed 52, context: html, text, full: html, text
    running up selfChain for Katie Pollard request
• src/hg/makeDb/doc/rn6.txt
  • lines changed 256, context: html, text, full: html, text
    up to date with all procedures refs #13578
  • lines changed 6, context: html, text, full: html, text
    fixup ucscToINSDC build refs #13578
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    adding blatServers entry refs #13578
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 2, context: html, text, full: html, text
    Added sorAra2; moved sorAra1 to secondary assembly list (redmine #9348)
• src/hg/makeDb/genbank/etc/rr.dbs
  • lines changed 4, context: html, text, full: html, text
    Added ochPri3 and sorAra2; moved ochPri2 and sorAra1 to secondary assembly list (redmine #9347,9348)
• src/hg/makeDb/schema/all.joiner
  • lines changed 8, context: html, text, full: html, text
    adding rn6, refs #13578
• src/hg/makeDb/trackDb/gadMor/gadMor1/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on atlantic cod (gadMor1) track description pages
• src/hg/makeDb/trackDb/gadMor/gadMor1/gap.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on atlantic cod (gadMor1) track description pages
• src/hg/makeDb/trackDb/gadMor/gadMor1/gold.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on atlantic cod (gadMor1) track description pages
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
  • lines changed 20, context: html, text, full: html, text
    Updating chainNetPrimate.ra to present nomLeu3 chain/net, noticedy by syncAday script #9812
• src/hg/makeDb/trackDb/human/hg19/allHg19RS_BW.html
  • lines changed 2, context: html, text, full: html, text
    Added minor doc changes from code review, refs #13535
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    first version of gene interactions track, refs #13634
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra
  • lines changed 3, context: html, text, full: html, text
    Add track description for DNAse cluster update. refs #13490
• src/hg/makeDb/trackDb/joinedRmsk.html
  • lines changed 440, context: html, text, full: html, text
    description for new RepeatMasker visualiation refs #9741
• src/hg/makeDb/trackDb/mouse/mm10/chainNet.html
  • lines changed 23, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
  • lines changed 52, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/mouse/mm10/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/mouse/mm10/knownGene.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/mouse/mm10/knownGeneOld6.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/mouse/mm10/vertebrateChainNet.html
  • lines changed 23, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM2.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/pig/susScr2/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on pig (susScr2) track description pages
• src/hg/makeDb/trackDb/pig/susScr2/gold.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on pig (susScr2) track description pages
• src/hg/makeDb/trackDb/pubs.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on yeast (sacCer2) track description pages
• src/hg/makeDb/trackDb/qPcrPrimers.html
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    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/rat/rn6/description.html
  • lines changed 2, context: html, text, full: html, text
    Updating rat NCBI assembly links, refs #13578
• src/hg/makeDb/trackDb/rat/rn6/gap.html
  • lines changed 1, context: html, text, full: html, text
    Updating rat NCBI assembly links, refs #13578
• src/hg/makeDb/trackDb/rat/rn6/gold.html
  • lines changed 1, context: html, text, full: html, text
    Updating rat NCBI assembly links, refs #13578
• src/hg/makeDb/trackDb/sacCer/sacCer2/description.html
  • lines changed 4, context: html, text, full: html, text
    Changing links on yeast (sacCer2) track description pages
• src/hg/makeDb/trackDb/sacCer/sacCer2/gold.html
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    Changing links on yeast (sacCer2) track description pages
• src/hg/makeDb/trackDb/sacCer/sacCer2/multiz7way.html
  • lines changed 63, context: html, text, full: html, text
    Changing links on yeast (sacCer2) track description pages
• src/hg/makeDb/trackDb/sheep/oviAri1/description.html
  • lines changed 7, context: html, text, full: html, text
    Changing links on sheep (oviAri1) track description pages
• src/hg/makeDb/trackDb/sheep/oviAri1/gold.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on sheep (oviAri1) track description pages
• src/hg/makeDb/trackDb/snp137.shared.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/snp138.shared.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on mouse (mm10) track description pages
• src/hg/makeDb/trackDb/tarsier/tarSyr1/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on tarsier (tarSyr1) track description pages
• src/hg/makeDb/trackDb/tarsier/tarSyr1/gap.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on tarsier (tarSyr1) track description pages
• src/hg/makeDb/trackDb/tarsier/tarSyr1/gold.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on tarsier (tarSyr1) track description pages
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    new repeat masker visualization is now in group rep not varRep refs #9741
• src/hg/qaPushQ/qaPushQ.c
  • lines changed 35, context: html, text, full: html, text
    fix relative links
• src/hg/txCds/txCdsPredict/txCdsPredict.c
  • lines changed 2, context: html, text, full: html, text
    Improving commenting a little.
• src/hg/utils/hubCheck/hubCheck.c
  • lines changed 4, context: html, text, full: html, text
    hubCheck needs a call to setUdcCacheDir. -udcDir option still works.
  • lines changed 7, context: html, text, full: html, text
    Adding cacheTime command line option.
• src/hg/utils/hubCheck/makefile
  • lines changed 1, context: html, text, full: html, text
    need HALLIBS for hubCheck
• src/lib/axtAffine.c
  • lines changed 1, context: html, text, full: html, text
    Expanding limit on alignment size since machines are bigger now.
• src/lib/udc.c
  • lines changed 1, context: html, text, full: html, text
    To be safe, udcSetDefaultDir should cloneString the path given to it.
• src/lib/vcf.c
  • lines changed 3, context: html, text, full: html, text
    VCF header's FILTER lines' end quotes need to be stripped from descriptions.fixes #13614.
    
• src/utils/bamMerge/bamMerge.c
  • lines changed 3, context: html, text, full: html, text
    Fixed stylistic errors and updated the comments
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v303 final build refs #13448

• lines changed: 4612
• files changed: 169