Commits for kate
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v304_preview2 to v304_base (2014-08-04 to 2014-08-11) v304
- Adding cell table/file to V3 DNase Clusters. refs #13490
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegDnaseClustered.ra - lines changed 12, context: html, text, full: html, text
- Adding source table that describes sourceIds in main bed table. Not currently used by hgc (which still uses inputTrackTable). It is there for VAI. refs 13490
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 1, context: html, text, full: html, text
- Adding source table that describes sourceIds in main bed table. Not currently used by hgc (which still uses inputTrackTable). It is there for VAI. refs 13490
- src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 12, context: html, text, full: html, text
- Rename Cells table to Sources. refs #13490
- src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 1, context: html, text, full: html, text
- Renaming cells table to sources and adding .as. refs #13490
- src/hg/lib/wgEncodeRegDnaseClusteredSources.as - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegDnaseClustered.ra - lines changed 9, context: html, text, full: html, text
- Generalize sourceScores, per Angie's suggestion
- src/hg/lib/bed5SourceVals.as - lines changed 12, context: html, text, full: html, text
- Tool to load GTEx (NIH Common Fund Gene Tissue Expression). Quite similar to microarray table organization.
- src/hg/inc/gtexSample.h - lines changed 69, context: html, text, full: html, text
- src/hg/lib/gtexData.c - lines changed 156, context: html, text, full: html, text
- src/hg/lib/gtexSample.as - lines changed 8, context: html, text, full: html, text
- src/hg/lib/gtexSample.c - lines changed 155, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/hgGtex.c - lines changed 231, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/makefile - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/samples.txt - lines changed 4502, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/test.gct - lines changed 6, context: html, text, full: html, text
- Add trivial test to Gtex loader
- src/hg/makeDb/outside/hgGtex/expected/gtexTest.tab - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/expected/gtexTestSamples.tab - lines changed 2921, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/input/samples.txt - lines changed 4502, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/input/small.gct - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/makefile - lines changed 9, context: html, text, full: html, text
- Add trivial test to Gtex loader
- src/hg/makeDb/outside/hgGtex/samples.txt - lines changed 4502, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/test.gct - lines changed 6, context: html, text, full: html, text
- Aim GTex tests at real data
- src/hg/makeDb/outside/hgGtex/input/samples.txt - lines changed 4502, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/input/small.gct - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/outside/hgGtex/makefile - lines changed 5, context: html, text, full: html, text
- Minor cleanup
- src/hg/makeDb/outside/hgGtex/hgGtex.c - lines changed 68, context: html, text, full: html, text
- Add sample grouping of Gtex data
- src/hg/makeDb/outside/hgGtex/hgGtex.c - lines changed 70, context: html, text, full: html, text
- Medians basically works
- src/hg/makeDb/outside/hgGtex/hgGtex.c - lines changed 59, context: html, text, full: html, text
- Correct tablename mismatch
- src/hg/lib/wgEncodeRegDnaseClusteredSources.as - lines changed 1, context: html, text, full: html, text
- Add debug
- src/hg/makeDb/outside/hgGtex/hgGtex.c - lines changed 4, context: html, text, full: html, text
- Fix problem with median compute (lost last sample in set)
- src/hg/makeDb/outside/hgGtex/hgGtex.c - lines changed 4, context: html, text, full: html, text
- Fix another off by one err
- src/hg/makeDb/outside/hgGtex/hgGtex.c - lines changed 2, context: html, text, full: html, text
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