File Changes for hiram

v304_preview to v304_preview2 (2014-07-28 to 2014-08-04) v304

• src/hg/hgLogin/hgLogin.c
  • lines changed 1, context: html, text, full: html, text
    hgLogin evidently needs setUdcCacheDir refs #9859
• src/hg/hgTracks/hgTracks.h
  • lines changed 1, context: html, text, full: html, text
    changing jRepeatMethods to rmskJoinedMethods refs #13706
• src/hg/hgTracks/joinedRmskTrack.c
  • lines changed 1182, context: html, text, full: html, text
    rename file to be more consistent refs #13706
• src/hg/hgTracks/makefile
  • lines changed 3, context: html, text, full: html, text
    changing file name from joinedRmskTrack to rmskJoinedTrack refs #13706
• src/hg/hgTracks/rmskJoinedTrack.c
  • lines changed 1182, context: html, text, full: html, text
    rename file to be more consistent refs #13706
  • lines changed 31, context: html, text, full: html, text
    changing methods names to be more consistent and formatting blank space after function calls() refs #13706
  • lines changed 15, context: html, text, full: html, text
    trying a color palette from snakeTrack display refs #13706
• src/hg/hgTracks/simpleTracks.c
  • lines changed 3, context: html, text, full: html, text
    changing jRepeatMethods to rmskJoinedMethods refs #13706
• src/hg/hgc/joinedRmskClick.c
  • lines changed 410, context: html, text, full: html, text
    change file name joinedRmskClick to rmskJoinedClick.c refs #13706
• src/hg/hgc/makefile
  • lines changed 3, context: html, text, full: html, text
    change file name joinedRmskClick to rmskJoinedClick.c refs #13706
• src/hg/hgc/rmskJoinedClick.c
  • lines changed 410, context: html, text, full: html, text
    change file name joinedRmskClick to rmskJoinedClick.c refs #13706
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    super track bigBed was trying to find table info does not exist refs #13713
• src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra
  • lines changed 185, context: html, text, full: html, text
    first pass at a clone end track refs #13713
  • lines changed 48, context: html, text, full: html, text
    with library identification refs #13713
  • lines changed 24, context: html, text, full: html, text
    now with overlap coverage and indicating multiple mappings refs #13713
• src/hg/makeDb/trackDb/human/cloneEndSuper.html
  • lines changed 16, context: html, text, full: html, text
    adding clone end description refs #13713
• src/hg/makeDb/trackDb/human/hg38/trackDb.7way.ra
  • lines changed 3, context: html, text, full: html, text
    shorter shor labels refs #13300
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    first pass at a clone end track refs #13713
• src/hg/makeDb/trackDb/joinedRmsk.html
  • lines changed 17, context: html, text, full: html, text
    trying a color palette from snakeTrack display refs #13706
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    now with overlap coverage and indicating multiple mappings refs #13713
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 1, context: html, text, full: html, text
    poing to credits _use instead of _credits refs #13645
• src/product/README.building.source
  • lines changed 9, context: html, text, full: html, text
    indicate PDF format not available error message solved refs #13744
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v304 preview2 refs #13703