Commits for hiram

v304_preview to v304_preview2 (2014-07-28 to 2014-08-04) v304

• hgLogin evidently needs setUdcCacheDir refs #9859
  • src/hg/hgLogin/hgLogin.c - lines changed 1, context: html, text, full: html, text
• first pass at a clone end track refs #13713
  • src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra - lines changed 185, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text
• shorter shor labels refs #13300
  • src/hg/makeDb/trackDb/human/hg38/trackDb.7way.ra - lines changed 3, context: html, text, full: html, text
• super track bigBed was trying to find table info does not exist refs #13713
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text
• with library identification refs #13713
  • src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra - lines changed 48, context: html, text, full: html, text
• adding clone end description refs #13713
  • src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 16, context: html, text, full: html, text
• poing to credits _use instead of _credits refs #13645
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 1, context: html, text, full: html, text
• now with overlap coverage and indicating multiple mappings refs #13713
  • src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• rename file to be more consistent refs #13706
  • src/hg/hgTracks/joinedRmskTrack.c - lines changed 1182, context: html, text, full: html, text
  • src/hg/hgTracks/rmskJoinedTrack.c - lines changed 1182, context: html, text, full: html, text
• changing methods names to be more consistent and formatting blank space after function calls() refs #13706
  • src/hg/hgTracks/rmskJoinedTrack.c - lines changed 31, context: html, text, full: html, text
• changing file name from joinedRmskTrack to rmskJoinedTrack refs #13706
  • src/hg/hgTracks/makefile - lines changed 3, context: html, text, full: html, text
• changing jRepeatMethods to rmskJoinedMethods refs #13706
  • src/hg/hgTracks/hgTracks.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text
• trying a color palette from snakeTrack display refs #13706
  • src/hg/hgTracks/rmskJoinedTrack.c - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/joinedRmsk.html - lines changed 17, context: html, text, full: html, text
• change file name joinedRmskClick to rmskJoinedClick.c refs #13706
  • src/hg/hgc/joinedRmskClick.c - lines changed 410, context: html, text, full: html, text
  • src/hg/hgc/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/rmskJoinedClick.c - lines changed 410, context: html, text, full: html, text
• indicate PDF format not available error message solved refs #13744
  • src/product/README.building.source - lines changed 9, context: html, text, full: html, text
• v304 preview2 refs #13703
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text