File Changes for angie

v305_preview2 to v305_base (2014-08-25 to 2014-09-02) v305

• src/hg/hgTables/hgTables.c
  • lines changed 4, context: html, text, full: html, text
    In doOutHyperlinks, no attempt was made to find a tdb for table2 whenintersecting, but we can find it for cheap in fullTrackList.
    Meanwhile, passing NULL into ensureVisibility caused a call to
    hTrackDbForTrackAndAncestors which doesn't work for custom tracks
    anyway (and used to SEGV when given a custom track). Thanks Matt for finding!
    refs #13776
    
• src/hg/inc/hdb.h
  • lines changed 1, context: html, text, full: html, text
    Added a missing NULL check to hTrackDbForTrackAndAncestors, which was SEGV'ing in #13776.I also noticed that it doesn't support custom tracks, but the right way to add that
    functionality would be more disruptive, and there are only 4 places that call
    hTrackDbForTrackAndAncestors. So I added a comment warning to the declaration and
    an error message in case I'm wrong about custom tracks not being passed into this.
    refs #13776
    
• src/hg/lib/cart.c
  • lines changed 3, context: html, text, full: html, text
    Prevent segv triggered by blank line in user's settings URL.refs #13669
    
• src/hg/lib/hdb.c
  • lines changed 12, context: html, text, full: html, text
    Added a missing NULL check to hTrackDbForTrackAndAncestors, which was SEGV'ing in #13776.I also noticed that it doesn't support custom tracks, but the right way to add that
    functionality would be more disruptive, and there are only 4 places that call
    hTrackDbForTrackAndAncestors. So I added a comment warning to the declaration and
    an error message in case I'm wrong about custom tracks not being passed into this.
    refs #13776
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 59, context: html, text, full: html, text
    Methylation scores (bed 9 for color scale similar to HAIB Methyl RRBS tracks) for Neandertal and Denisova.refs #13439
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 2, context: html, text, full: html, text
    Methylation scores (bed 9 for color scale similar to HAIB Methyl RRBS tracks) for Neandertal and Denisova.refs #13439
    
• src/hg/makeDb/trackDb/human/hg19/denisovaMethylation.html
  • lines changed 31, context: html, text, full: html, text
    Methylation scores (bed 9 for color scale similar to HAIB Methyl RRBS tracks) for Neandertal and Denisova.refs #13439
    
• src/hg/makeDb/trackDb/human/hg19/neandertalMethylation.html
  • lines changed 31, context: html, text, full: html, text
    Methylation scores (bed 9 for color scale similar to HAIB Methyl RRBS tracks) for Neandertal and Denisova.refs #13439
    
• src/hg/makeDb/trackDb/human/hg19/trackDb.denisova.ra
  • lines changed 7, context: html, text, full: html, text
    Methylation scores (bed 9 for color scale similar to HAIB Methyl RRBS tracks) for Neandertal and Denisova.refs #13439
    
• src/hg/makeDb/trackDb/human/trackDb.nt.ra
  • lines changed 8, context: html, text, full: html, text
    Methylation scores (bed 9 for color scale similar to HAIB Methyl RRBS tracks) for Neandertal and Denisova.refs #13439