Commits for angie
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v305_preview2 to v305_base (2014-08-25 to 2014-09-02) v305
- Prevent segv triggered by blank line in user's settings URL.refs #13669
- Methylation scores (bed 9 for color scale similar to HAIB Methyl RRBS tracks) for Neandertal and Denisova.refs #13439
- src/hg/makeDb/doc/hg19.txt - lines changed 59, context: html, text, full: html, text
- src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/denisovaMethylation.html - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/neandertalMethylation.html - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.denisova.ra - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/trackDb.nt.ra - lines changed 8, context: html, text, full: html, text
- Added a missing NULL check to hTrackDbForTrackAndAncestors, which was SEGV'ing in #13776.I also noticed that it doesn't support custom tracks, but the right way to add that
functionality would be more disruptive, and there are only 4 places that call
hTrackDbForTrackAndAncestors. So I added a comment warning to the declaration and
an error message in case I'm wrong about custom tracks not being passed into this.
refs #13776
- In doOutHyperlinks, no attempt was made to find a tdb for table2 whenintersecting, but we can find it for cheap in fullTrackList.
Meanwhile, passing NULL into ensureVisibility caused a call to
hTrackDbForTrackAndAncestors which doesn't work for custom tracks
anyway (and used to SEGV when given a custom track). Thanks Matt for finding!
refs #13776
- src/hg/hgTables/hgTables.c - lines changed 4, context: html, text, full: html, text
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