File Changes for angie

v305_preview to v305_preview2 (2014-08-18 to 2014-08-25) v305

• src/hg/hgTracks/bamTrack.c
  • lines changed 1, context: html, text, full: html, text
    Revert "Two problems noticed by Angie in code review. Redmine #13704."
    This reverts commit 936b5b5319541bf59421b258703a4f6af54790e3.
    
    refs #13833
    
  • lines changed 5, context: html, text, full: html, text
    Revert "Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time."
    This reverts commit a4adfa326bf8bec73020ee1a8aa0cb6251ea8663.
    
    refs #13833
    
• src/hg/hgTracks/bedTrack.c
  • lines changed 2, context: html, text, full: html, text
    Revert "Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time."
    This reverts commit a4adfa326bf8bec73020ee1a8aa0cb6251ea8663.
    
    refs #13833
    
• src/hg/hgTracks/chainTrack.c
  • lines changed 1, context: html, text, full: html, text
    Revert "Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time."
    This reverts commit a4adfa326bf8bec73020ee1a8aa0cb6251ea8663.
    
    refs #13833
    
• src/hg/hgTracks/hgTracks.h
  • lines changed 6, context: html, text, full: html, text
    Revert "Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time."
    This reverts commit a4adfa326bf8bec73020ee1a8aa0cb6251ea8663.
    
    refs #13833
    
• src/hg/hgTracks/rnaFoldTrack.c
  • lines changed 4, context: html, text, full: html, text
    Revert "Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time."
    This reverts commit a4adfa326bf8bec73020ee1a8aa0cb6251ea8663.
    
    refs #13833
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 2, context: html, text, full: html, text
    Revert "Restoring the default values for lfColors after the changes in a4adfa326b and 936b5b531."
    This reverts commit 706b20f0ff54a3bf502e9697c35f46a267c1aec9.
    
    refs #13833
    
  • lines changed 6, context: html, text, full: html, text
    Revert "Two problems noticed by Angie in code review. Redmine #13704."
    This reverts commit 936b5b5319541bf59421b258703a4f6af54790e3.
    
    refs #13833
    
  • lines changed 146, context: html, text, full: html, text
    Revert "Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time."
    This reverts commit a4adfa326bf8bec73020ee1a8aa0cb6251ea8663.
    
    refs #13833