File Changes for kent

v305_preview to v305_preview2 (2014-08-18 to 2014-08-25) v305

• src/hg/encode3/eap/oneShot/dnaseHg38AddTreatments/dnaseHg38AddTreatments.c
  • lines changed 83, context: html, text, full: html, text
    Little wrangling program to add treatments and augment short labels with them.
• src/hg/encode3/eap/oneShot/dnaseHg38AddTreatments/makefile
  • lines changed 3, context: html, text, full: html, text
    Little wrangling program to add treatments and augment short labels with them.
• src/hg/encode3/eap/oneShot/dnaseHg38Batch/dnaseHg38Batch.c
  • lines changed 74, context: html, text, full: html, text
    A little utility to help generate batches for dnase.
  • lines changed 65, context: html, text, full: html, text
    Creating meta.tab output to associate experiment and biosample. Making jobList explicitly to deal with difference between single file and pooled file cases.
  • lines changed 1, context: html, text, full: html, text
    Suppressing a near duplicate line in meta.txt.
• src/hg/encode3/eap/oneShot/dnaseHg38Batch/makefile
  • lines changed 4, context: html, text, full: html, text
    A little utility to help generate batches for dnase.
• src/hg/oneShot/freen/freen.c
  • lines changed 76, context: html, text, full: html, text
    Setting up hac tree test.
  • lines changed 103, context: html, text, full: html, text
    Freen does a new type of hacTree generation.
  • lines changed 111, context: html, text, full: html, text
    Moving an alternative hacTree implementation that minimizes the merge steps to the library.
  • lines changed 1, context: html, text, full: html, text
    Adding childDistance
• src/inc/hacTree.h
  • lines changed 7, context: html, text, full: html, text
    Moving an alternative hacTree implementation that minimizes the merge steps to the library.
• src/inc/pairDistance.h
  • lines changed 31, context: html, text, full: html, text
    Oops forgot to add this.
• src/lib/hacTree.c
  • lines changed 103, context: html, text, full: html, text
    Moving an alternative hacTree implementation that minimizes the merge steps to the library.
  • lines changed 4, context: html, text, full: html, text
    Adding childDistance
• src/lib/makefile
  • lines changed 5, context: html, text, full: html, text
    Moving pairDistance stuff to library.
• src/lib/pairDistance.c
  • lines changed 80, context: html, text, full: html, text
    Moving pairDistance stuff to library.
• src/parasol/gensub2/gensub2.c
  • lines changed 15, context: html, text, full: html, text
    Adding selfPair as a special case second list like single.
• src/utils/distributeRgbRainbow/distributeRgbRainbow.c
  • lines changed 107, context: html, text, full: html, text
    Program to assign colors to a list based on distances seems to work.
• src/utils/distributeRgbRainbow/makefile
  • lines changed 7, context: html, text, full: html, text
    Program to assign colors to a list based on distances seems to work.
• src/utils/distributeRgbRainbow/test.expected
  • lines changed 6, context: html, text, full: html, text
    Program to assign colors to a list based on distances seems to work.
• src/utils/distributeRgbRainbow/test.lst
  • lines changed 6, context: html, text, full: html, text
    Program to assign colors to a list based on distances seems to work.
• src/utils/distributeRgbRainbow/test.pair
  • lines changed 15, context: html, text, full: html, text
    Program to assign colors to a list based on distances seems to work.
• src/utils/orderMiddle/makefile
  • lines changed 3, context: html, text, full: html, text
    Making utility that uses pair distance information to order the middle of a list while preserving ends.
• src/utils/orderMiddle/orderMiddle.c
  • lines changed 225, context: html, text, full: html, text
    Making utility that uses pair distance information to order the middle of a list while preserving ends.
  • lines changed 84, context: html, text, full: html, text
    Moving pairDistance stuff to library.
  • lines changed 4, context: html, text, full: html, text
    Removing some debugging and decreasing verbosity.
• src/utils/orderMiddle/test.expected
  • lines changed 6, context: html, text, full: html, text
    Adding test set
• src/utils/orderMiddle/test.lst
  • lines changed 6, context: html, text, full: html, text
    Adding test set
• src/utils/orderMiddle/test.pair
  • lines changed 15, context: html, text, full: html, text
    Adding test set