Commits for kent
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v305_preview to v305_preview2 (2014-08-18 to 2014-08-25) v305
- A little utility to help generate batches for dnase.
- src/hg/encode3/eap/oneShot/dnaseHg38Batch/dnaseHg38Batch.c - lines changed 74, context: html, text, full: html, text
- src/hg/encode3/eap/oneShot/dnaseHg38Batch/makefile - lines changed 4, context: html, text, full: html, text
- Adding selfPair as a special case second list like single.
- src/parasol/gensub2/gensub2.c - lines changed 15, context: html, text, full: html, text
- Creating meta.tab output to associate experiment and biosample. Making jobList explicitly to deal with difference between single file and pooled file cases.
- src/hg/encode3/eap/oneShot/dnaseHg38Batch/dnaseHg38Batch.c - lines changed 65, context: html, text, full: html, text
- Suppressing a near duplicate line in meta.txt.
- src/hg/encode3/eap/oneShot/dnaseHg38Batch/dnaseHg38Batch.c - lines changed 1, context: html, text, full: html, text
- Little wrangling program to add treatments and augment short labels with them.
- src/hg/encode3/eap/oneShot/dnaseHg38AddTreatments/dnaseHg38AddTreatments.c - lines changed 83, context: html, text, full: html, text
- src/hg/encode3/eap/oneShot/dnaseHg38AddTreatments/makefile - lines changed 3, context: html, text, full: html, text
- Making utility that uses pair distance information to order the middle of a list while preserving ends.
- src/utils/orderMiddle/makefile - lines changed 3, context: html, text, full: html, text
- src/utils/orderMiddle/orderMiddle.c - lines changed 225, context: html, text, full: html, text
- Moving pairDistance stuff to library.
- src/lib/pairDistance.c - lines changed 80, context: html, text, full: html, text
- src/utils/orderMiddle/orderMiddle.c - lines changed 84, context: html, text, full: html, text
- Adding test set
- src/utils/orderMiddle/test.expected - lines changed 6, context: html, text, full: html, text
- src/utils/orderMiddle/test.lst - lines changed 6, context: html, text, full: html, text
- src/utils/orderMiddle/test.pair - lines changed 15, context: html, text, full: html, text
- Program to assign colors to a list based on distances seems to work.
- src/utils/distributeRgbRainbow/distributeRgbRainbow.c - lines changed 107, context: html, text, full: html, text
- src/utils/distributeRgbRainbow/makefile - lines changed 7, context: html, text, full: html, text
- src/utils/distributeRgbRainbow/test.expected - lines changed 6, context: html, text, full: html, text
- src/utils/distributeRgbRainbow/test.lst - lines changed 6, context: html, text, full: html, text
- src/utils/distributeRgbRainbow/test.pair - lines changed 15, context: html, text, full: html, text
- Setting up hac tree test.
- src/hg/oneShot/freen/freen.c - lines changed 76, context: html, text, full: html, text
- Freen does a new type of hacTree generation.
- src/hg/oneShot/freen/freen.c - lines changed 103, context: html, text, full: html, text
- Moving an alternative hacTree implementation that minimizes the merge steps to the library.
- src/hg/oneShot/freen/freen.c - lines changed 111, context: html, text, full: html, text
- Removing some debugging and decreasing verbosity.
- src/utils/orderMiddle/orderMiddle.c - lines changed 4, context: html, text, full: html, text
- Adding childDistance
- src/hg/oneShot/freen/freen.c - lines changed 1, context: html, text, full: html, text
- Oops forgot to add this.
- src/inc/pairDistance.h - lines changed 31, context: html, text, full: html, text
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