File Changes for max

v306_preview2 to v306_base (2014-09-15 to 2014-09-22) v306

• src/hg/htdocs/ebola/index.html
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    trying to fix broken inks
• src/hg/htdocs/ebolaPortal/index.html
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    fixing some links in a different version of the same file...
  • lines changed 3, context: html, text, full: html, text
    fixing special chars introduced by some weird editor
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    removing hgsid from link
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    removing a link
• src/hg/makeDb/doc/eboVir2/iedb.txt
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    makedoc for iedb track
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    adding another genbank track, plus a few changes to track groupings
• src/hg/makeDb/trackDb/ebola/eboVir2/iedb.html
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    description pages for iedb track
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    desc pages for iedb split t cell track
• src/hg/makeDb/trackDb/ebola/eboVir2/iedbBcell.html
  • lines changed 12, context: html, text, full: html, text
    description pages for iedb track
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    changes to iedb desc pages
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    iedb desc page update
• src/hg/makeDb/trackDb/ebola/eboVir2/iedbTcellLong.html
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    desc pages for iedb split t cell track
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    changes to iedb desc pages
• src/hg/makeDb/trackDb/ebola/eboVir2/iedbTcellShort.html
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    desc pages for iedb split t cell track
  • lines changed 7, context: html, text, full: html, text
    changes to iedb desc pages
• src/hg/makeDb/trackDb/ebola/eboVir2/spMut.html
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    moving spMut.html up to global, keeping a modified copy in ebola
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra
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    adding B-cell epitope track
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    adding a few more linkouts
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    adding one more linkout
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    adding uniprot gene descriptions
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    moving spMut.html up to global, keeping a modified copy in ebola
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    fixing urls of iedb tcells
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    forgot what I'm comitting here
  • lines changed 7, context: html, text, full: html, text
    adding iedb predictions
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    adding another uniprot track, only structure-based info
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    typo
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    moving IEDB tracks into new immunology group
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    t pushZZMerge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
    
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    adding genbank alignments
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    adding url
  • lines changed 33, context: html, text, full: html, text
    adding another genbank track, plus a few changes to track groupings
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    gold to hide
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    gold to hide
  • lines changed 14, context: html, text, full: html, text
    track title change
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    adding arjun's prediction's as a temporary dev track. will need morework on the details page
    
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    t pushMerge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
    
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    splitting tcell track into two depending on length of peptide
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    adding pdb track
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    inc weidth
• src/hg/makeDb/trackDb/human/spMut.html
  • lines changed 75, context: html, text, full: html, text
    moving spMut.html up to global, keeping a modified copy in ebola
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 11, context: html, text, full: html, text
    moving spMut track into global trackDb file
  • lines changed 11, context: html, text, full: html, text
    moving spAnnot up global and adding a description page
• src/hg/makeDb/trackDb/spAnnot.html
  • lines changed 65, context: html, text, full: html, text
    moving spAnnot up global and adding a description page
• src/hg/makeDb/trackDb/spMut.html
  • lines changed 75, context: html, text, full: html, text
    moving spMut.html up to global, keeping a modified copy in ebola
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 11, context: html, text, full: html, text
    moving spMut track into global trackDb file
  • lines changed 11, context: html, text, full: html, text
    moving spAnnot up global and adding a description page
  • lines changed 2, context: html, text, full: html, text
    adding another genbank track, plus a few changes to track groupings
• src/hg/makeDb/trackDb/uniprot.txt
  • lines changed 15, context: html, text, full: html, text
    new uniprot lifting pipeline and makedoc for it for ebola
• src/oneShot/bedFixBlockOverlaps/bedFixBlockOverlaps
  • lines changed 54, context: html, text, full: html, text
    little script to fix block overlaps in bed files
• src/oneShot/bedFixBlockOverlaps/makefile
  • lines changed 22, context: html, text, full: html, text
    little script to fix block overlaps in bed files
• src/utils/uniprotLift/makefile
  • lines changed 22, context: html, text, full: html, text
    new uniprot lifting pipeline and makedoc for it for ebola
• src/utils/uniprotLift/uniprotLift
  • lines changed 316, context: html, text, full: html, text
    new uniprot lifting pipeline and makedoc for it for ebola