Commits for max

v306_preview2 to v306_base (2014-09-15 to 2014-09-22) v306

• adding B-cell epitope track
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 11, context: html, text, full: html, text
• adding a few more linkouts
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• adding one more linkout
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• makedoc for iedb track
  • src/hg/makeDb/doc/eboVir2/iedb.txt - lines changed 37, context: html, text, full: html, text
• description pages for iedb track
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedb.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedbBcell.html - lines changed 12, context: html, text, full: html, text
• adding uniprot gene descriptions
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• trying to fix broken inks
  • src/hg/htdocs/ebola/index.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• fixing some links in a different version of the same file...
  • src/hg/htdocs/ebolaPortal/index.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• fixing special chars introduced by some weird editor
  • src/hg/htdocs/ebolaPortal/index.html - lines changed 3, context: html, text, full: html, text
• removing hgsid from link
  • src/hg/htdocs/ebolaPortal/index.html - lines changed 1, context: html, text, full: html, text
• removing a link
  • src/hg/htdocs/ebolaPortal/index.html - lines changed 1, context: html, text, full: html, text
• moving spMut track into global trackDb file
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 11, context: html, text, full: html, text
• moving spMut.html up to global, keeping a modified copy in ebola
  • src/hg/makeDb/trackDb/ebola/eboVir2/spMut.html - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spMut.html - lines changed 75, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/spMut.html - lines changed 75, context: html, text, full: html, text
• fixing urls of iedb tcells
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• moving spAnnot up global and adding a description page
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/spAnnot.html - lines changed 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 11, context: html, text, full: html, text
• t pushMerge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
• forgot what I'm comitting here
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 5, context: html, text, full: html, text
• new uniprot lifting pipeline and makedoc for it for ebola
  • src/hg/makeDb/trackDb/uniprot.txt - lines changed 15, context: html, text, full: html, text
  • src/utils/uniprotLift/makefile - lines changed 22, context: html, text, full: html, text
  • src/utils/uniprotLift/uniprotLift - lines changed 316, context: html, text, full: html, text
• little script to fix block overlaps in bed files
  • src/oneShot/bedFixBlockOverlaps/bedFixBlockOverlaps - lines changed 54, context: html, text, full: html, text
  • src/oneShot/bedFixBlockOverlaps/makefile - lines changed 22, context: html, text, full: html, text
• t Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
• adding iedb predictions
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 7, context: html, text, full: html, text
• adding another uniprot track, only structure-based info
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 11, context: html, text, full: html, text
• typo
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• moving IEDB tracks into new immunology group
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 3, context: html, text, full: html, text
• t pushZZMerge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
  
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 11, context: html, text, full: html, text
• adding genbank alignments
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 7, context: html, text, full: html, text
• adding url
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• adding another genbank track, plus a few changes to track groupings
  • src/hg/makeDb/doc/eboVir2/iedb.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text
• gold to hide
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• gold to hide
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• track title change
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 14, context: html, text, full: html, text
• adding arjun's prediction's as a temporary dev track. will need morework on the details page
  
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 7, context: html, text, full: html, text
• t pushMerge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
  
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 19, context: html, text, full: html, text
• splitting tcell track into two depending on length of peptide
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 11, context: html, text, full: html, text
• desc pages for iedb split t cell track
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedb.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedbTcellLong.html - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedbTcellShort.html - lines changed 17, context: html, text, full: html, text
• adding pdb track
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 12, context: html, text, full: html, text
• inc weidth
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 2, context: html, text, full: html, text
• changes to iedb desc pages
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedbBcell.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedbTcellLong.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedbTcellShort.html - lines changed 7, context: html, text, full: html, text
• iedb desc page update
  • src/hg/makeDb/trackDb/ebola/eboVir2/iedbBcell.html - lines changed 4, context: html, text, full: html, text