Commits for max

v306_base to v307_preview (2014-09-22 to 2014-09-29) v307

• changes after code review refs #14033
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 3, context: html, text, full: html, text
• t pushMerge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
  
• moving iedb,uniprot,pdb tracks to eboVir3
  • src/hg/makeDb/doc/eboVir3/iedb.txt - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/doc/eboVir3/pdb.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/doc/eboVir3/uniprot.txt - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbBcell.html - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbBcellNeg.html - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbTcellI.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/iedbTcellII.html - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spAnnot.html - lines changed 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spMut.html - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spStruct.html - lines changed 57, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.ra - lines changed 71, context: html, text, full: html, text
• moving small tools into utils directory
  • src/oneShot/bedFixBlockOverlaps/bedFixBlockOverlaps - lines changed 54, context: html, text, full: html, text
  • src/oneShot/bedFixBlockOverlaps/makefile - lines changed 22, context: html, text, full: html, text
  • src/utils/bedFixBlockOverlaps - lines changed 54, context: html, text, full: html, text
  • src/utils/makefile - lines changed 3, context: html, text, full: html, text
  • src/utils/uniprotLift - lines changed 349, context: html, text, full: html, text
  • src/utils/uniprotLift/makefile - lines changed 22, context: html, text, full: html, text
  • src/utils/uniprotLift/uniprotLift - lines changed 316, context: html, text, full: html, text
• pdb desc page
  • src/hg/makeDb/trackDb/ebola/eboVir3/pdb.html - lines changed 37, context: html, text, full: html, text
• desc page for netMhc track
  • src/hg/makeDb/trackDb/ebola/eboVir2/arjun.html - lines changed 117, context: html, text, full: html, text
• desc page for eboVir2.pdb
  • src/hg/makeDb/trackDb/ebola/eboVir2/pdb.html - lines changed 37, context: html, text, full: html, text
• adding desc pages for genbank matches on eboVir2
  • src/hg/makeDb/trackDb/ebola/eboVir2/genbank.html - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/genbankNotZaire.html - lines changed 17, context: html, text, full: html, text
• fixing gbib bug in vai, refs #11957
  • src/lib/annoAssembly.c - lines changed 2, context: html, text, full: html, text
• fixing Vai gbib error, refs #11957
  • src/lib/annoAssembly.c - lines changed 3, context: html, text, full: html, text
• fixing hgConvert gbib bug, refs #11957
  • src/hg/lib/liftOver.c - lines changed 1, context: html, text, full: html, text