Commits for hiram

v309_preview2 to v309_base (2014-11-17 to 2014-11-24) v309

• new sequence procedure under construction refs #14278
  • src/hg/makeDb/doc/eboVir3/newSequences.txt - lines changed 147, context: html, text, full: html, text
• adding four new sequences refs #14278
  • src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.newSequences.ra - lines changed 74, context: html, text, full: html, text
• using correct Snp table refs #14278
  • src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.newSequences.ra - lines changed 2, context: html, text, full: html, text
• Added dm6 refs #4049
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• dm6 GeneTbl upstreamMaf set to 27-way refs #4049
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text
• added phyloP and phastCons to 27-way refs #4049
  • src/hg/makeDb/doc/dm6.txt - lines changed 187, context: html, text, full: html, text
• descr page for 27-way refs #4049
  • src/hg/makeDb/trackDb/drosophila/dm6/cons27way.html - lines changed 411, context: html, text, full: html, text
• correct reference to 27 refs #4049
  • src/hg/makeDb/trackDb/drosophila/dm6/cons27way.html - lines changed 2, context: html, text, full: html, text
• initial files from makeGenomeDb refs #14410
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.ra - lines changed 8, context: html, text, full: html, text
• adding tarSyr2 to the build refs #14410
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• new includes for top level trackDb for joinedRmsk refs #14410
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 2, context: html, text, full: html, text
• turning on phastCons phyloP and reset default viz refs #4049
  • src/hg/makeDb/trackDb/drosophila/dm6/flyBaseGene.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm6/trackDb.27way.ra - lines changed 68, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra - lines changed 4, context: html, text, full: html, text
• adding felCat8 to the build refs #14412
  • src/hg/makeDb/trackDb/cat/felCat8/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat8/gap.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat8/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat8/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• v309 final build refs #14342
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v309
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text