Commits for max

v308_base to v309_preview (2014-11-03 to 2014-11-10) v309

• red/blue colors to clinvar, refs #14045
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 6, context: html, text, full: html, text
• typo in clinvar html
  • src/hg/makeDb/trackDb/human/clinvar.html - lines changed 1, context: html, text, full: html, text
• new clone ends track group
  • src/hg/makeDb/trackDb/human/hg19/trackDb.cloneEnd.ra - lines changed 550, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• changes after code review, refs #14298
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/doUpdate.sh - lines changed 1, context: html, text, full: html, text
• small bugfix for clinvar otto, refs #14045
  • src/hg/utils/otto/clinvar/doUpdate.sh - lines changed 1, context: html, text, full: html, text
• fixing broken clinvar track on the RR by adding release tags
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 32, context: html, text, full: html, text
• script for builmeister that clones the buildmeister's gbib VM into thebeta VM for QA
  
  • src/utils/qa/weeklybld/boxClone - lines changed 80, context: html, text, full: html, text
• removing the reference to qateam's home directory from the gbib releasescript
  
  • src/utils/qa/weeklybld/boxRelease.csh - lines changed 1, context: html, text, full: html, text
• bugfix for clinvar otto
  • src/hg/utils/otto/clinvar/doUpdate.sh - lines changed 1, context: html, text, full: html, text
• removed duplicated line in last gbib commit (e30e926564), refs #14176
  • src/hg/hgLiftOver/hgLiftOver.c - lines changed 1, context: html, text, full: html, text
• few changes to move the buildmeister's gbib VM into the qateam's homedir
  • src/utils/qa/weeklybld/boxClone - lines changed 42, context: html, text, full: html, text
• small changes to clone end trackDb files
  • src/hg/makeDb/trackDb/human/hg19/trackDb.cloneEnd.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.cloneEnd.ra - lines changed 550, context: html, text, full: html, text
• adding ucsc clone ends track to hg38
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• clinvar makedoc
  • src/hg/makeDb/doc/hg19.txt - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 3, context: html, text, full: html, text