File Changes for hiram

v310_preview2 to v310_base (2014-12-15 to 2015-01-05) v310

• src/hg/htdocs/images/phylo/hg38_17way.png
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    hg38 phylo tree for primate alignment refs #14560
• src/hg/htdocs/images/phylo/tarSyr2_17way.png
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    tarSyr2 phylo tree for primate alignment refs #14560
• src/hg/inc/versionInfo.h
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    New version number v310
• src/hg/makeDb/doc/hg38/lastzRuns.txt
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    almost done with all primates refs #14560
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    16 primates alignments done refs #14560
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    ready for downloads and pushQ refs #13560
• src/hg/makeDb/doc/hg38/multiz17way.txt
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    ready for downloads and pushQ refs #13560
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    done with 17-way downloads refs #14560
• src/hg/makeDb/doc/oviAri3.txt
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    liftOver to oviAri1 refs #14582
• src/hg/makeDb/doc/tarSyr1.txt
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    liftOver to tarSyr2 computed in 8 days refs #14410
• src/hg/makeDb/doc/tarSyr2/initialBuild.txt
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    ready for downloads and pushQ refs #13560
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    tarSyr2 browser in the pushQ refs #14410
• src/hg/makeDb/doc/tarSyr2/lastzRuns.txt
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    almost done with all primates refs #14560
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    16 primates alignments done refs #14560
• src/hg/makeDb/doc/tarSyr2/multiz17way.txt
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    ready for downloads and pushQ refs #13560
• src/hg/makeDb/schema/all.joiner
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    adding tarSyr2 refs #14560
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    clean up tarSyr2 refs #14560
• src/hg/makeDb/trackDb/human/chainNetOtoGar1.ra
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/chainNetOtoGar3.ra
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/chainNetRBestOtoGar1.ra
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/chainNetRBestOtoGar3.ra
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/chainNetStray.ra
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    no longer stray chain nets, now in composites refs #14560
• src/hg/makeDb/trackDb/human/chainNetTarSyr1.ra
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/chainNetTarSyr2.ra
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra
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    adding 17-way trackDb refs #14560
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    continue adding and fixing up primate chain net ordering refs #14543 #14560
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    adding 17-way trackDb refs #14560
• src/hg/makeDb/trackDb/tarsier/tarSyr2/cons17way.html
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    initial contents description page 17-way refs #14560
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    update gene annotation note refs #14560
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.17way.ra
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    17-way on tarSyr2 reference refs #14560
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    turning on frames annotations refs #14560
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.chainNet.ra
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    correct ordering for chain net tracks refs #14560
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.ra
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    17-way on tarSyr2 reference refs #14560
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    correct ordering for chain net tracks refs #14560
• src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra
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    adding nasLar1 and rhiRox1 refs #14560
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    release tags and overrides confuse tdbQuery remove release alpha refs #14560
• src/hg/utils/automation/doBlastzChainNet.pl
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    construct downloads for synNet refs #14560
• src/hg/utils/phyloTrees/183way.commonNames.nh
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    adding nasLar1 rhiRox1 refs #14560
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    update tarSyr1 to tarSyr2 refs #14560
• src/hg/utils/phyloTrees/183way.nh
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    adding nasLar1 rhiRox1 refs #14560
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    update tarSyr1 to tarSyr2 refs #14560
• src/hg/utils/phyloTrees/183way.scientificNames.nh
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    adding nasLar1 rhiRox1 refs #14560
• src/hg/utils/phyloTrees/asciiTree.pl
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    adding nasLar1 rhiRox1 refs #14560
• src/hg/utils/phyloTrees/commonNames.sh
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    adding nasLar1 rhiRox1 refs #14560
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    update tarSyr1 to tarSyr2 refs #14560
• src/hg/utils/phyloTrees/makefile
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    adding nasLar1 rhiRox1 refs #14560
• src/hg/utils/phyloTrees/scientificNames.sh
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    adding nasLar1 rhiRox1 refs #14560
• src/utils/qa/weeklybld/buildEnv.csh
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    v310 preview2 refs #14506
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    v310 final build refs #14494