Commits for hiram
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v310_preview2 to v310_base (2014-12-15 to 2015-01-05) v310
- v310 preview2 refs #14506
- src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text
- almost done with all primates refs #14560
- src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 863, context: html, text, full: html, text
- almost done with all primates refs #14560
- src/hg/makeDb/doc/tarSyr2/lastzRuns.txt - lines changed 1427, context: html, text, full: html, text
- adding nasLar1 and rhiRox1 refs #14560
- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 121, context: html, text, full: html, text
- adding nasLar1 rhiRox1 refs #14560
- src/hg/utils/phyloTrees/183way.commonNames.nh - lines changed 183, context: html, text, full: html, text
- src/hg/utils/phyloTrees/183way.nh - lines changed 183, context: html, text, full: html, text
- src/hg/utils/phyloTrees/183way.scientificNames.nh - lines changed 183, context: html, text, full: html, text
- src/hg/utils/phyloTrees/asciiTree.pl - lines changed 41, context: html, text, full: html, text
- src/hg/utils/phyloTrees/commonNames.sh - lines changed 4, context: html, text, full: html, text
- src/hg/utils/phyloTrees/makefile - lines changed 7, context: html, text, full: html, text
- src/hg/utils/phyloTrees/scientificNames.sh - lines changed 2, context: html, text, full: html, text
- 16 primates alignments done refs #14560
- src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 4, context: html, text, full: html, text
- 16 primates alignments done refs #14560
- src/hg/makeDb/doc/tarSyr2/lastzRuns.txt - lines changed 12, context: html, text, full: html, text
- hg38 phylo tree for primate alignment refs #14560
- src/hg/htdocs/images/phylo/hg38_17way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- update tarSyr1 to tarSyr2 refs #14560
- src/hg/utils/phyloTrees/183way.commonNames.nh - lines changed 1, context: html, text, full: html, text
- src/hg/utils/phyloTrees/183way.nh - lines changed 1, context: html, text, full: html, text
- src/hg/utils/phyloTrees/commonNames.sh - lines changed 1, context: html, text, full: html, text
- liftOver to tarSyr2 computed in 8 days refs #14410
- src/hg/makeDb/doc/tarSyr1.txt - lines changed 15, context: html, text, full: html, text
- construct downloads for synNet refs #14560
- src/hg/utils/automation/doBlastzChainNet.pl - lines changed 10, context: html, text, full: html, text
- 17-way on tarSyr2 reference refs #14560
- src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.17way.ra - lines changed 105, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.ra - lines changed 1, context: html, text, full: html, text
- adding 17-way trackDb refs #14560
- src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra - lines changed 105, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
- continue adding and fixing up primate chain net ordering refs #14543 #14560
- src/hg/makeDb/trackDb/human/chainNetOtoGar1.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chainNetOtoGar3.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chainNetPrimate.ra - lines changed 102, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chainNetRBestOtoGar1.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chainNetRBestOtoGar3.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chainNetTarSyr1.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chainNetTarSyr2.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra - lines changed 1, context: html, text, full: html, text
- correct ordering for chain net tracks refs #14560
- src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.chainNet.ra - lines changed 107, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.ra - lines changed 1, context: html, text, full: html, text
- no longer stray chain nets, now in composites refs #14560
- src/hg/makeDb/trackDb/human/chainNetStray.ra - lines changed 33, context: html, text, full: html, text
- release tags and overrides confuse tdbQuery remove release alpha refs #14560
- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 30, context: html, text, full: html, text
- turning on frames annotations refs #14560
- src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.17way.ra - lines changed 1, context: html, text, full: html, text
- liftOver to oviAri1 refs #14582
- src/hg/makeDb/doc/oviAri3.txt - lines changed 21, context: html, text, full: html, text
- ready for downloads and pushQ refs #13560
- src/hg/makeDb/doc/tarSyr2/initialBuild.txt - lines changed 260, context: html, text, full: html, text
- src/hg/makeDb/doc/tarSyr2/multiz17way.txt - lines changed 1606, context: html, text, full: html, text
- ready for downloads and pushQ refs #13560
- src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 79, context: html, text, full: html, text
- src/hg/makeDb/doc/hg38/multiz17way.txt - lines changed 1603, context: html, text, full: html, text
- adding tarSyr2 refs #14560
- src/hg/makeDb/schema/all.joiner - lines changed 7, context: html, text, full: html, text
- tarSyr2 phylo tree for primate alignment refs #14560
- src/hg/htdocs/images/phylo/tarSyr2_17way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- clean up tarSyr2 refs #14560
- src/hg/makeDb/schema/all.joiner - lines changed 7, context: html, text, full: html, text
- tarSyr2 browser in the pushQ refs #14410
- src/hg/makeDb/doc/tarSyr2/initialBuild.txt - lines changed 22, context: html, text, full: html, text
- done with 17-way downloads refs #14560
- src/hg/makeDb/doc/hg38/multiz17way.txt - lines changed 18, context: html, text, full: html, text
- initial contents description page 17-way refs #14560
- src/hg/makeDb/trackDb/tarsier/tarSyr2/cons17way.html - lines changed 446, context: html, text, full: html, text
- update gene annotation note refs #14560
- src/hg/makeDb/trackDb/tarsier/tarSyr2/cons17way.html - lines changed 4, context: html, text, full: html, text
- v310 final build refs #14494
- src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
- New version number v310
- src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
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