Commits for kate

v311_preview2 to v311_base (2015-01-20 to 2015-01-26) v311

• Add 'subGroupMetaTables' setting to trackDb. This setting allows specification of a metadata table (minimally description+url) describing terms in a subgroup (e.g. hgFixed.wgEncodeCell for the 'cellType' subgroup in ENCODE tracks. This ia aimed at providing basic metadata functionality with lower overhead than the cv.ra + metaDb table used during ENCODE2. refs #14353
  • src/hg/encode3/cellsFromEncode3.py - lines changed 62, context: html, text, full: html, text
  • src/hg/inc/encode/wgEncodeCell.h - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeCell.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeCell.c - lines changed 18, context: html, text, full: html, text
  • src/hg/lib/encode/wgEncodeCell.sql - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 86, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/reg.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/uwDnase.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• Use color constant (one step toward using style)
  • src/hg/lib/web.c - lines changed 1, context: html, text, full: html, text
• Merge duplicated code. refs #14353
  • src/hg/hgc/peakClusters.c - lines changed 51, context: html, text, full: html, text
• Add inputFieldMetaTables setting to trackDb. It provides a way to add meta tables to non-composites (same functionality as subGroupMetaTables setting). Used in details of DNase clusters, to replace cv.ra and metaDb. refs #14353
  • src/hg/hgc/peakClusters.c - lines changed 64, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 10, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/uwDnase.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• Add link to table browser view of table in 'more info' section of clutser details (as we have no metadata link). refs #14353
  • src/hg/hgc/peakClusters.c - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/reg.txt - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/uwDnase.ra - lines changed 191, context: html, text, full: html, text
• Fix typo caught by alert Angie during review.
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text
• Fix table sort bug (wasn't doing subsorts on columns other than the clicked one). refs #14723
  • src/hg/js/utils.js - lines changed 16, context: html, text, full: html, text
• Make wigLeftLbels respect color param. Needed to force black labels on unaggregated full multiwigs (JK request)
  • src/hg/hgTracks/wigTrack.c - lines changed 4, context: html, text, full: html, text
• force black labels on unaggregated full multiwigs (JK request)
  • src/hg/hgTracks/multiWig.c - lines changed 2, context: html, text, full: html, text
• Use composite color for dense mode center label (instead of first track
  • src/hg/hgTracks/hgTracks.c - lines changed 8, context: html, text, full: html, text