File Changes for angie

v310_base to v311_preview (2015-01-05 to 2014-01-12) v311

• src/hg/encode3/eap/eapMetaSync/eapMetaSync.c
  • lines changed 5, context: html, text, full: html, text
    Extended jsonWriteObjectStart to support an optional preceding tag;added jsonWriteStringf, jsonWriteBoolean, jsonWriteValueLabelList, and
    jsonWriteSlNameList. To be used by cartJson and hgAi.
    
• src/hg/hgVai/hgVai.c
  • lines changed 13, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
• src/hg/hgVai/libifyMe.c
  • lines changed 232, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
• src/hg/hgVai/libifyMe.h
  • lines changed 21, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
• src/hg/inc/cart.h
  • lines changed 7, context: html, text, full: html, text
    Adding cartEmptyShellNoContent so a CGI can postpone the Content-Type decision to doMiddle.
• src/hg/inc/cartJson.h
  • lines changed 58, context: html, text, full: html, text
    Adding cartJson lib module (to be used by hgAi). It parses JSON commands andreturns information in JSON to support moving more UI actions into Javascript.
    The lib supports basic queries and actions like getting a list of the groups,
    tracks and tables (incl. hubs & CTs) and changing the clade/genome/db. Apps/CGIs
    can extend it to handle new commands by registering handler functions.
    
• src/hg/inc/customTrack.h
  • lines changed 3, context: html, text, full: html, text
    Adding cartJson lib module (to be used by hgAi). It parses JSON commands andreturns information in JSON to support moving more UI actions into Javascript.
    The lib supports basic queries and actions like getting a list of the groups,
    tracks and tables (incl. hubs & CTs) and changing the clade/genome/db. Apps/CGIs
    can extend it to handle new commands by registering handler functions.
    
• src/hg/inc/hAnno.h
  • lines changed 31, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
• src/hg/inc/hdb.h
  • lines changed 13, context: html, text, full: html, text
    Adding cartJson lib module (to be used by hgAi). It parses JSON commands andreturns information in JSON to support moving more UI actions into Javascript.
    The lib supports basic queries and actions like getting a list of the groups,
    tracks and tables (incl. hubs & CTs) and changing the clade/genome/db. Apps/CGIs
    can extend it to handle new commands by registering handler functions.
    
• src/hg/lib/cart.c
  • lines changed 27, context: html, text, full: html, text
    Adding cartEmptyShellNoContent so a CGI can postpone the Content-Type decision to doMiddle.
• src/hg/lib/cartJson.c
  • lines changed 731, context: html, text, full: html, text
    Adding cartJson lib module (to be used by hgAi). It parses JSON commands andreturns information in JSON to support moving more UI actions into Javascript.
    The lib supports basic queries and actions like getting a list of the groups,
    tracks and tables (incl. hubs & CTs) and changing the clade/genome/db. Apps/CGIs
    can extend it to handle new commands by registering handler functions.
    
• src/hg/lib/customTrack.c
  • lines changed 9, context: html, text, full: html, text
    Adding cartJson lib module (to be used by hgAi). It parses JSON commands andreturns information in JSON to support moving more UI actions into Javascript.
    The lib supports basic queries and actions like getting a list of the groups,
    tracks and tables (incl. hubs & CTs) and changing the clade/genome/db. Apps/CGIs
    can extend it to handle new commands by registering handler functions.
    
• src/hg/lib/hAnno.c
  • lines changed 303, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
• src/hg/lib/hdb.c
  • lines changed 81, context: html, text, full: html, text
    Adding cartJson lib module (to be used by hgAi). It parses JSON commands andreturns information in JSON to support moving more UI actions into Javascript.
    The lib supports basic queries and actions like getting a list of the groups,
    tracks and tables (incl. hubs & CTs) and changing the clade/genome/db. Apps/CGIs
    can extend it to handle new commands by registering handler functions.
    
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
  • lines changed 1, context: html, text, full: html, text
    Adding cartJson lib module (to be used by hgAi). It parses JSON commands andreturns information in JSON to support moving more UI actions into Javascript.
    The lib supports basic queries and actions like getting a list of the groups,
    tracks and tables (incl. hubs & CTs) and changing the clade/genome/db. Apps/CGIs
    can extend it to handle new commands by registering handler functions.
    
• src/hg/oneShot/ga4ghToBed/ga4ghToBed.c
  • lines changed 1, context: html, text, full: html, text
    Extended jsonWriteObjectStart to support an optional preceding tag;added jsonWriteStringf, jsonWriteBoolean, jsonWriteValueLabelList, and
    jsonWriteSlNameList. To be used by cartJson and hgAi.
    
• src/inc/annoFormatTab.h
  • lines changed 5, context: html, text, full: html, text
    Added annoFormatTabSetColumnVis so that columns can be selectively included in output.
• src/inc/annoStreamBigWig.h
  • lines changed 3, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
• src/inc/annoStreamer.h
  • lines changed 10, context: html, text, full: html, text
    Added annoStreamer{Get,Set}Name so that we're not stuck with awfully long filenames etc.
• src/inc/jsonParse.h
  • lines changed 3, context: html, text, full: html, text
    Fixed the behavior of jsonStringEscape for \n, \r and \t. Previously,it was inserting a \ followed by the actual \n / \r / \t character, which
    was not actually escaping it. A \n needs to be replaced by a \ followed by
    an n not \n. Also added jsonOptionalBooleanField.
    
• src/inc/jsonWrite.h
  • lines changed 15, context: html, text, full: html, text
    Extended jsonWriteObjectStart to support an optional preceding tag;added jsonWriteStringf, jsonWriteBoolean, jsonWriteValueLabelList, and
    jsonWriteSlNameList. To be used by cartJson and hgAi.
    
• src/lib/annoFormatTab.c
  • lines changed 77, context: html, text, full: html, text
    Added annoFormatTabSetColumnVis so that columns can be selectively included in output.
• src/lib/annoStreamBigWig.c
  • lines changed 7, context: html, text, full: html, text
    Libified code from hgVai/libifyMe.c to lib/hAnno.c in anticipationof sharing code with hgAi. Also added hAnnoGetAutoSqlForTdb for hgAi.
    
• src/lib/annoStreamer.c
  • lines changed 13, context: html, text, full: html, text
    Added annoStreamer{Get,Set}Name so that we're not stuck with awfully long filenames etc.
• src/lib/jsonParse.c
  • lines changed 25, context: html, text, full: html, text
    Fixed the behavior of jsonStringEscape for \n, \r and \t. Previously,it was inserting a \ followed by the actual \n / \r / \t character, which
    was not actually escaping it. A \n needs to be replaced by a \ followed by
    an n not \n. Also added jsonOptionalBooleanField.
    
• src/lib/jsonWrite.c
  • lines changed 83, context: html, text, full: html, text
    Extended jsonWriteObjectStart to support an optional preceding tag;added jsonWriteStringf, jsonWriteBoolean, jsonWriteValueLabelList, and
    jsonWriteSlNameList. To be used by cartJson and hgAi.