File Changes for hiram

v314_preview2 to v314_base (2015-03-23 to 2015-03-30) v314

• src/hg/hgTables/great.c
  • lines changed 6, context: html, text, full: html, text
    allow hg18 to go to the archive server refs #14881
    
• src/hg/hgTables/greatData/supportedAssemblies.txt
  • lines changed 1, context: html, text, full: html, text
    allow hg18 to go to the archive server refs #14881
    
• src/hg/htdocs/images/Chlorocebus_sabaeus.jpg
  • lines changed 0, context: html, text, full: html, text
    adding photo for chlSab2 refs #11172 from wikimedia commons user Atamari
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v314
    
• src/hg/makeDb/doc/nanPar1/initialBuild.txt
  • lines changed 70, context: html, text, full: html, text
    running up genbank refs #15056
    
• src/hg/makeDb/doc/rhiRox1/fetchChrMt.sh
  • lines changed 14, context: html, text, full: html, text
    done with rhiRox1 build refs #14438
    
• src/hg/makeDb/doc/rhiRox1/initialBuild.txt
  • lines changed 554, context: html, text, full: html, text
    done with rhiRox1 build refs #14438
    
• src/hg/makeDb/doc/rhiRox1/lastzRuns.txt
  • lines changed 77, context: html, text, full: html, text
    done with rhiRox1 build refs #14438
    
• src/hg/makeDb/doc/rhiRox1/unplaced.pl
  • lines changed 48, context: html, text, full: html, text
    done with rhiRox1 build refs #14438
    
• src/hg/makeDb/doc/xenTro2.txt
  • lines changed 15, context: html, text, full: html, text
    adding liftovers from frog to frog versions refs #15023
    
• src/hg/makeDb/doc/xenTro3.txt
  • lines changed 14, context: html, text, full: html, text
    adding liftovers from frog to frog versions refs #15023
    
• src/hg/makeDb/doc/xenTro7.txt
  • lines changed 29, context: html, text, full: html, text
    adding liftovers from frog to frog versions refs #15023
    
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    turning on chlSab2 refs #11172
    
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 22, context: html, text, full: html, text
    Added nanPar Nanorana parkeri refs #15056
    
  • lines changed 23, context: html, text, full: html, text
    Added chlSab Chlorocebus sabaeus refs #11172
    
  • lines changed 103, context: html, text, full: html, text
    DO NOT NEED genbank.mrna.xeno except for human, mouse refs #11172
    
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    turning on chlSab2 refs #11172
    
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    Added nanPar Nanorana parkeri refs #15056
    
  • lines changed 2, context: html, text, full: html, text
    Added chlSab Chlorocebus sabaeus refs #11172
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 10, context: html, text, full: html, text
    add rhiRox1 rules refs #14438
    
  • lines changed 11, context: html, text, full: html, text
    adding chlSab2 refs #11172
    
• src/hg/makeDb/trackDb/chlorocebus/chlSab2/description.html
  • lines changed 63, context: html, text, full: html, text
    initial files for chlSab2 refs #11172
    
• src/hg/makeDb/trackDb/chlorocebus/chlSab2/gap.html
  • lines changed 31, context: html, text, full: html, text
    initial files for chlSab2 refs #11172
    
• src/hg/makeDb/trackDb/chlorocebus/chlSab2/gold.html
  • lines changed 34, context: html, text, full: html, text
    initial files for chlSab2 refs #11172
    
• src/hg/makeDb/trackDb/chlorocebus/chlSab2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial files for chlSab2 refs #11172
    
  • lines changed 5, context: html, text, full: html, text
    add gold table search rule refs #11172
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    initial files for chlSab2 refs #11172
    
• src/hg/makeDb/trackDb/rhinopithecus/rhiRox1/trackDb.ra
  • lines changed 5, context: html, text, full: html, text
    add gold table search rule #14438
    
• src/hg/utils/automation/makePushQSql.pl
  • lines changed 5, context: html, text, full: html, text
    correctly setup file lists for reciprocalBest downloads refs #14560
    
• src/hg/utils/automation/ncbiToUcsc.sh
  • lines changed 178, context: html, text, full: html, text
    convert NCBI download files into 2bit and AGP file with UCSC naming scheme refs #14560
    
• src/hg/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    adding genePredToBigGenePred to the build refs #15067
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v314 final build refs #14991