Commits for hiram

v314_preview2 to v314_base (2015-03-23 to 2015-03-30) v314

• add gold table search rule #14438
  
  • src/hg/makeDb/trackDb/rhinopithecus/rhiRox1/trackDb.ra - lines changed 5, context: html, text, full: html, text
• add rhiRox1 rules refs #14438
  
  • src/hg/makeDb/schema/all.joiner - lines changed 10, context: html, text, full: html, text
• allow hg18 to go to the archive server refs #14881
  
  • src/hg/hgTables/great.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTables/greatData/supportedAssemblies.txt - lines changed 1, context: html, text, full: html, text
• done with rhiRox1 build refs #14438
  
  • src/hg/makeDb/doc/rhiRox1/fetchChrMt.sh - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/doc/rhiRox1/initialBuild.txt - lines changed 554, context: html, text, full: html, text
  • src/hg/makeDb/doc/rhiRox1/lastzRuns.txt - lines changed 77, context: html, text, full: html, text
  • src/hg/makeDb/doc/rhiRox1/unplaced.pl - lines changed 48, context: html, text, full: html, text
• Added nanPar Nanorana parkeri refs #15056
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• running up genbank refs #15056
  
  • src/hg/makeDb/doc/nanPar1/initialBuild.txt - lines changed 70, context: html, text, full: html, text
• adding liftovers from frog to frog versions refs #15023
  
  • src/hg/makeDb/doc/xenTro2.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/doc/xenTro3.txt - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/doc/xenTro7.txt - lines changed 29, context: html, text, full: html, text
• adding photo for chlSab2 refs #11172 from wikimedia commons user Atamari
  
  • src/hg/htdocs/images/Chlorocebus_sabaeus.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• initial files for chlSab2 refs #11172
  
  • src/hg/makeDb/trackDb/chlorocebus/chlSab2/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chlorocebus/chlSab2/gap.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chlorocebus/chlSab2/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chlorocebus/chlSab2/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• add gold table search rule refs #11172
  
  • src/hg/makeDb/trackDb/chlorocebus/chlSab2/trackDb.ra - lines changed 5, context: html, text, full: html, text
• Added chlSab Chlorocebus sabaeus refs #11172
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• adding genePredToBigGenePred to the build refs #15067
  
  • src/hg/utils/makefile - lines changed 1, context: html, text, full: html, text
• turning on chlSab2 refs #11172
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• adding chlSab2 refs #11172
  
  • src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text
• DO NOT NEED genbank.mrna.xeno except for human, mouse refs #11172
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 103, context: html, text, full: html, text
• convert NCBI download files into 2bit and AGP file with UCSC naming scheme refs #14560
  
  • src/hg/utils/automation/ncbiToUcsc.sh - lines changed 178, context: html, text, full: html, text
• correctly setup file lists for reciprocalBest downloads refs #14560
  
  • src/hg/utils/automation/makePushQSql.pl - lines changed 5, context: html, text, full: html, text
• v314 final build refs #14991
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v314
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text