Commits for hiram

v314_preview to v314_preview2 (2015-03-16 to 2015-03-23) v314

• default vis hide refs #11636
  
  • src/hg/makeDb/trackDb/human/hg19/trackDb.cacTest100way.ra - lines changed 1, context: html, text, full: html, text
• cacTest include for alpha only refs #11636
  
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• adding v79 definitions refs #15005
  
  • src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 233, context: html, text, full: html, text
• adding search rule for gold table refs #9868
  
  • src/hg/makeDb/trackDb/xenTro/xenTro7/trackDb.ra - lines changed 5, context: html, text, full: html, text
• add some Rna utils to the userApps refs #14513
  
  • src/hg/makefile - lines changed 6, context: html, text, full: html, text
• xenTro7 in the pushQ refs #9868
  
  • src/hg/makeDb/doc/xenTro3.txt - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/doc/xenTro7.txt - lines changed 180, context: html, text, full: html, text
• xenTro7 in the pushQ refs #9868
  
  • src/hg/makeDb/doc/xenTro7.txt - lines changed 5, context: html, text, full: html, text
• scripts used for lastz_D tuning procedure refs #14513
  
  • src/hg/utils/automation/lastz_D/README.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/utils/automation/lastz_D/adjustSizes.pl - lines changed 111, context: html, text, full: html, text
  • src/hg/utils/automation/lastz_D/createScoresFileControl.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/utils/automation/lastz_D/expandScoresFile.py - lines changed 179, context: html, text, full: html, text
  • src/hg/utils/automation/lastz_D/mafScoreSizeScan.pl - lines changed 59, context: html, text, full: html, text
  • src/hg/utils/automation/lastz_D/scoreScan.sh - lines changed 17, context: html, text, full: html, text
  • src/hg/utils/automation/lastz_D/selectedFasta.sh - lines changed 47, context: html, text, full: html, text
  • src/hg/utils/automation/lastz_D/topAll.sh - lines changed 67, context: html, text, full: html, text
• scripts used for lastz_D tuning procedure refs #14513
  
  • src/hg/utils/automation/lastz_D/README.txt - lines changed 1, context: html, text, full: html, text
• photo courtesy Copyright (C) 2013 Kai Wang http://wangwenzhiwen.blog.163.com/ refs #14560
  
  • src/hg/htdocs/images/Nanorana_parkeri.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• adding nanPar1 Tibetian frog to the build refs #14560
  
  • src/hg/makeDb/trackDb/frog/nanPar1/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/frog/nanPar1/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/frog/nanPar1/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/frog/nanPar1/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• add assembly/gold track search rule refs #14560
  
  • src/hg/makeDb/trackDb/frog/nanPar1/trackDb.ra - lines changed 5, context: html, text, full: html, text
• starting Tibetian frog browser build refs #14560
  
  • src/hg/makeDb/doc/nanPar1/initialBuild.txt - lines changed 508, context: html, text, full: html, text
• add blat server refs #14017
  
  • src/hg/makeDb/doc/danRer10/initialBuild.txt - lines changed 14, context: html, text, full: html, text
• add blat server refs #14437
  
  • src/hg/makeDb/doc/nasLar1/initialBuild.txt - lines changed 17, context: html, text, full: html, text
• add blat server refs #11174
  
  • src/hg/makeDb/doc/macFas5/initialBuild.txt - lines changed 22, context: html, text, full: html, text
• add blat server refs #14412
  
  • src/hg/makeDb/doc/felCat8/initialBuild.txt - lines changed 22, context: html, text, full: html, text
• add blat server refs #11348
  
  • src/hg/makeDb/doc/panPan1.txt - lines changed 33, context: html, text, full: html, text
• v314 preview2 refs #14998
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text