All File Changes

v315_preview2 to v315_base (2015-04-13 to 2015-04-20) v315

• src/hg/hgTables/hgTables.c
  • lines changed 1, context: html, text, full: html, text
    fix a hgTables problem with tracks with '.' in them in track hubs #15182
    
• src/hg/hgTables/joining.c
  • lines changed 2, context: html, text, full: html, text
    fix a hgTables problem with tracks with '.' in them in track hubs #15182
    
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
• src/hg/hgTracks/hgTracks.c
  • lines changed 46, context: html, text, full: html, text
    Revert "2nd version of external tools menu support"
    
    This reverts commit 9227292b25ce2fc4a36ee898691a49ab53105fab.
    
  • lines changed 33, context: html, text, full: html, text
    Revert "first go a external tools integration"
    
    This reverts commit ad9686d48e880c57458d09ac2cc03801dc822be4.
    
• src/hg/hgTracks/mainMain.c
  • lines changed 21, context: html, text, full: html, text
    Revert "2nd version of external tools menu support"
    
    This reverts commit 9227292b25ce2fc4a36ee898691a49ab53105fab.
    
  • lines changed 8, context: html, text, full: html, text
    Revert "first go a external tools integration"
    
    This reverts commit ad9686d48e880c57458d09ac2cc03801dc822be4.
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 18, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
  • lines changed 22, context: html, text, full: html, text
    hgTracks and trackDb changes for NCBI Genes track
    
• src/hg/htdocs/admin/403.html
  • lines changed 11, context: html, text, full: html, text
    Added mirror message to 404 adn 403 html pages, see ticket for more info refs #14718
    
• src/hg/htdocs/admin/404.html
  • lines changed 13, context: html, text, full: html, text
    Added mirror message to 404 adn 403 html pages, see ticket for more info refs #14718
    
• src/hg/htdocs/contacts.html
  • lines changed 14, context: html, text, full: html, text
    Added mirror message to contacts.html, see ticket for more info refs #14718
    
• src/hg/htdocs/goldenPath/help/bigGenePred.html
  • lines changed 15, context: html, text, full: html, text
    Adjusting example coordinates and adding track line info for codon display on bigGenePred page refs #14376
    
• src/hg/htdocs/images/phylo/hg38_20way.png
  • lines changed 0, context: html, text, full: html, text
    adding phylo images for 20-ways refs #15112 #14970
    
  • lines changed 0, context: html, text, full: html, text
    correctly honor underscores in the names refs #15112 #14970
    
• src/hg/htdocs/images/phylo/tarSyr2_20way.png
  • lines changed 0, context: html, text, full: html, text
    adding phylo images for 20-ways refs #15112 #14970
    
  • lines changed 0, context: html, text, full: html, text
    correctly honor underscores in the names refs #15112 #14970
    
• src/hg/htdocs/training/index.html
  • lines changed 6, context: html, text, full: html, text
    Adding entry for Sanford-Burnham workshop in Florida. refs #15011
    
  • lines changed 5, context: html, text, full: html, text
    Adding JMU workshop. refs #15011
    
• src/hg/inc/hdb.h
  • lines changed 6, context: html, text, full: html, text
    Libified hdb.c's trackDataAccessible for use in hgTrackDb, to add support for bigDataUrl-only tracks in -strict mode.
    Also added a check for existence of file, if bigDataUrl is a file instead of a URL.
    It would be good to further require in hgTrackDb that for bigDataUrl-based tracks,
    tdb must also have a release tag in order to prevent /gbdb/ tracks from sneaking from
    hgwbeta to RR -- but by the time pruneStrict is called, pruneRelease has already
    removed the release tag!
    More investigation required to see whether it's OK to call pruneStrict earlier.
    refs #14379 #15059
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v315
    
• src/hg/lib/genePred.c
  • lines changed 4, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)
    
• src/hg/lib/hdb.c
  • lines changed 21, context: html, text, full: html, text
    Libified hdb.c's trackDataAccessible for use in hgTrackDb, to add support for bigDataUrl-only tracks in -strict mode.
    Also added a check for existence of file, if bigDataUrl is a file instead of a URL.
    It would be good to further require in hgTrackDb that for bigDataUrl-based tracks,
    tdb must also have a release tag in order to prevent /gbdb/ tracks from sneaking from
    hgwbeta to RR -- but by the time pruneStrict is called, pruneRelease has already
    removed the release tag!
    More investigation required to see whether it's OK to call pruneStrict earlier.
    refs #14379 #15059
    
• src/hg/lib/joiner.c
  • lines changed 1, context: html, text, full: html, text
    fix a hgTables problem with tracks with '.' in them in track hubs #15182
    
• src/hg/lib/web.c
  • lines changed 14, context: html, text, full: html, text
    change message for redirect (#15110)
    
  • lines changed 1, context: html, text, full: html, text
    a momentous decision (per Brianl) to change the redirect statement
    
• src/hg/makeDb/doc/aquChr2/initialBuild.txt
  • lines changed 483, context: html, text, full: html, text
    in the pushQ refs #15096
    
• src/hg/makeDb/doc/chlSab2/fetchChrM.sh
  • lines changed 13, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/initialBuild.txt
  • lines changed 499, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/ucscCompositeAgp.pl
  • lines changed 44, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/unlocalized.pl
  • lines changed 70, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/unplaced.pl
  • lines changed 35, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/danRer10/initialBuild.txt
  • lines changed 42, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
• src/hg/makeDb/doc/danRer10/ncbiGene.txt
  • lines changed 34, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 26, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
• src/hg/makeDb/doc/hg38/hg38Patch3.txt
  • lines changed 558, context: html, text, full: html, text
    patch3 for hg38 is loaded refs #15143
    
• src/hg/makeDb/doc/hg38/multiz20way.txt
  • lines changed 232, context: html, text, full: html, text
    rebuild of 20-way with corrected mouse, dog, rhesus pairwise refs #14970
    
• src/hg/makeDb/doc/hg38/ncbiGene.txt
  • lines changed 35, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 96, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
  • lines changed 33, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/rn6.txt
  • lines changed 44, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
  • lines changed 34, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/tarSyr2/lastzRuns.txt
  • lines changed 188, context: html, text, full: html, text
    wrapping up the 20-way conservation track refs #15112
    
• src/hg/makeDb/doc/tarSyr2/multiz17way.txt
  • lines changed 4, context: html, text, full: html, text
    wrapping up the 20-way conservation track refs #15112
    
• src/hg/makeDb/doc/tarSyr2/multiz20way.txt
  • lines changed 1590, context: html, text, full: html, text
    tarSyr2 20-way alignment refs #15112
    
  • lines changed 8, context: html, text, full: html, text
    wrapping up the 20-way conservation track refs #15112
    
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes15.csh
  • lines changed 3, context: html, text, full: html, text
    add kgTargetSeq8 to blat servers (for new mm10 UCSC genes)
    
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added aquChr2 - Golden Eagle refs #15096
    
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    Added aquChr2 - Golden Eagle refs #15096
    
• src/hg/makeDb/genbank/src/dbload/gbMetaData.c
  • lines changed 64, context: html, text, full: html, text
    Allow ORFeome and MGC synthetic mRNAs even when Genbank entry is lacking
    a gene symbol. Also removed outdated check for non-full length MGC clones.
    Bug #15184
    
• src/hg/makeDb/genbank/src/inc/gbDefs.h
  • lines changed 9, context: html, text, full: html, text
    Allow ORFeome and MGC synthetic mRNAs even when Genbank entry is lacking
    a gene symbol. Also removed outdated check for non-full length MGC clones.
    Bug #15184
    
• src/hg/makeDb/genbank/src/lib/gbDefs.c
  • lines changed 63, context: html, text, full: html, text
    Allow ORFeome and MGC synthetic mRNAs even when Genbank entry is lacking
    a gene symbol. Also removed outdated check for non-full length MGC clones.
    Bug #15184
    
• src/hg/makeDb/genbank/src/process/gbProcess.c
  • lines changed 2, context: html, text, full: html, text
    Allow ORFeome and MGC synthetic mRNAs even when Genbank entry is lacking
    a gene symbol. Also removed outdated check for non-full length MGC clones.
    Bug #15184
    
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • lines changed 5, context: html, text, full: html, text
    Libified hdb.c's trackDataAccessible for use in hgTrackDb, to add support for bigDataUrl-only tracks in -strict mode.
    Also added a check for existence of file, if bigDataUrl is a file instead of a URL.
    It would be good to further require in hgTrackDb that for bigDataUrl-based tracks,
    tdb must also have a release tag in order to prevent /gbdb/ tracks from sneaking from
    hgwbeta to RR -- but by the time pruneStrict is called, pruneRelease has already
    removed the release tag!
    More investigation required to see whether it's OK to call pruneStrict earlier.
    refs #14379 #15059
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 7, context: html, text, full: html, text
    fix some mm10 UCSC genes errors in all.joiner
    
• src/hg/makeDb/trackDb/human/hg19/exac.html
  • lines changed 1, context: html, text, full: html, text
    Made minor change to ExAC description page; refs #14379
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgSegmentation.html
  • lines changed 6, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.html
  • lines changed 3, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release4.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html
  • lines changed 9, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeExonArraySuper.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.html
  • lines changed 2, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV17.html
  • lines changed 4, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.html
  • lines changed 3, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.html
  • lines changed 5, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.html
  • lines changed 9, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.html
  • lines changed 2, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.html
  • lines changed 2, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.html
  • lines changed 5, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
  • lines changed 3, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.html
  • lines changed 2, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html
  • lines changed 5, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.html
  • lines changed 3, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClustered.release2.html
  • lines changed 6, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html
  • lines changed 12, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.html
  • lines changed 14, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.html
  • lines changed 2, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.html
  • lines changed 17, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html
  • lines changed 5, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.html
  • lines changed 4, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.patch.html
  • lines changed 15, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.html
  • lines changed 4, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release4.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
  • lines changed 10, context: html, text, full: html, text
    wrapping up 20-way alignment refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/hg38Patch3.ra
  • lines changed 118, context: html, text, full: html, text
    adding patch3 tracks refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra
  • lines changed 1, context: html, text, full: html, text
    wrapping up 20-way alignment refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra
  • lines changed 11, context: html, text, full: html, text
    wrapping up 20-way alignment refs #15413
    
  • lines changed 7, context: html, text, full: html, text
    correct labels on the tracks refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    adding patch3 tracks refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnase.html
  • lines changed 2, context: html, text, full: html, text
    Code Review link fixes, refs #15162
    
• src/hg/makeDb/trackDb/human/hg38/wgEncodeRegDnaseSignal.html
  • lines changed 1, context: html, text, full: html, text
    Code Review link fixes, refs #15162
    
• src/hg/makeDb/trackDb/mouse/mm10/knownGeneOld7.html
  • lines changed 10, context: html, text, full: html, text
    add knownGeneOld7.html file
    
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    mouse/mm10/trackDb.ra
    
  • lines changed 4, context: html, text, full: html, text
    update the knownGeneOld table to be version 7 in trackDb
    
• src/hg/makeDb/trackDb/sibGene.html
  • lines changed 1, context: html, text, full: html, text
    Fixing up links on various hg19 ENCODE track description pages. Link fix on mm8 SIB genes page.
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/cons20way.html
  • lines changed 462, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.17way.ra
  • lines changed 1, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.20way.ra
  • lines changed 103, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
  • lines changed 7, context: html, text, full: html, text
    correct labels on the tracks refs #15413
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 22, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
  • lines changed 46, context: html, text, full: html, text
    hgTracks and trackDb changes for NCBI Genes track
    
  • lines changed 2, context: html, text, full: html, text
    changing the name of NCBI Genes to NCBI RefSeq Genes
    
  • lines changed 11, context: html, text, full: html, text
    add ncbiRefOverlap track
    
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 27, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
  • lines changed 17, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)
    
• src/inc/gff3.h
  • lines changed 3, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)
    
• src/lib/gff3.c
  • lines changed 3, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)
    
• src/lib/udc.c
  • lines changed 51, context: html, text, full: html, text
    changes after code review, refs #15164
    
• src/utils/qa/weeklybld/buildEnv.csh
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    v315 final build refs #15164
    

• lines changed: 5574
• files changed: 121