File Changes for braney

v315_preview2 to v315_base (2015-04-13 to 2015-04-20) v315

• src/hg/hgTables/hgTables.c
  • lines changed 1, context: html, text, full: html, text
    fix a hgTables problem with tracks with '.' in them in track hubs #15182
    
• src/hg/hgTables/joining.c
  • lines changed 2, context: html, text, full: html, text
    fix a hgTables problem with tracks with '.' in them in track hubs #15182
    
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 18, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
  • lines changed 22, context: html, text, full: html, text
    hgTracks and trackDb changes for NCBI Genes track
    
• src/hg/lib/genePred.c
  • lines changed 4, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)
    
• src/hg/lib/joiner.c
  • lines changed 1, context: html, text, full: html, text
    fix a hgTables problem with tracks with '.' in them in track hubs #15182
    
• src/hg/lib/web.c
  • lines changed 14, context: html, text, full: html, text
    change message for redirect (#15110)
    
  • lines changed 1, context: html, text, full: html, text
    a momentous decision (per Brianl) to change the redirect statement
    
• src/hg/makeDb/doc/danRer10/ncbiGene.txt
  • lines changed 34, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/hg38/ncbiGene.txt
  • lines changed 35, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 33, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/rn6.txt
  • lines changed 34, context: html, text, full: html, text
    make doc for NCBI Genes track
    
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes15.csh
  • lines changed 3, context: html, text, full: html, text
    add kgTargetSeq8 to blat servers (for new mm10 UCSC genes)
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 7, context: html, text, full: html, text
    fix some mm10 UCSC genes errors in all.joiner
    
• src/hg/makeDb/trackDb/mouse/mm10/knownGeneOld7.html
  • lines changed 10, context: html, text, full: html, text
    add knownGeneOld7.html file
    
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    update the knownGeneOld table to be version 7 in trackDb
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 22, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
  • lines changed 46, context: html, text, full: html, text
    hgTracks and trackDb changes for NCBI Genes track
    
  • lines changed 2, context: html, text, full: html, text
    changing the name of NCBI Genes to NCBI RefSeq Genes
    
  • lines changed 11, context: html, text, full: html, text
    add ncbiRefOverlap track
    
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 27, context: html, text, full: html, text
    first cut at NCBI Gene Annotations track for (N|X)(M|R) gene annotations from
    NCBI #13673
    
  • lines changed 17, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)
    
• src/inc/gff3.h
  • lines changed 3, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)
    
• src/lib/gff3.c
  • lines changed 3, context: html, text, full: html, text
    add a few new feature types to the processing of gff3ToGenePred (rRNA,
    ncRNA, primary-transcript)