File Changes for hiram

v315_preview2 to v315_base (2015-04-13 to 2015-04-20) v315

• src/hg/htdocs/images/phylo/hg38_20way.png
  • lines changed 0, context: html, text, full: html, text
    adding phylo images for 20-ways refs #15112 #14970
    
  • lines changed 0, context: html, text, full: html, text
    correctly honor underscores in the names refs #15112 #14970
    
• src/hg/htdocs/images/phylo/tarSyr2_20way.png
  • lines changed 0, context: html, text, full: html, text
    adding phylo images for 20-ways refs #15112 #14970
    
  • lines changed 0, context: html, text, full: html, text
    correctly honor underscores in the names refs #15112 #14970
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v315
    
• src/hg/makeDb/doc/aquChr2/initialBuild.txt
  • lines changed 483, context: html, text, full: html, text
    in the pushQ refs #15096
    
• src/hg/makeDb/doc/chlSab2/fetchChrM.sh
  • lines changed 13, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/initialBuild.txt
  • lines changed 499, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/ucscCompositeAgp.pl
  • lines changed 44, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/unlocalized.pl
  • lines changed 70, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/chlSab2/unplaced.pl
  • lines changed 35, context: html, text, full: html, text
    in the pushQ refs #11172
    
• src/hg/makeDb/doc/danRer10/initialBuild.txt
  • lines changed 42, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 26, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
• src/hg/makeDb/doc/hg38/hg38Patch3.txt
  • lines changed 558, context: html, text, full: html, text
    patch3 for hg38 is loaded refs #15143
    
• src/hg/makeDb/doc/hg38/multiz20way.txt
  • lines changed 232, context: html, text, full: html, text
    rebuild of 20-way with corrected mouse, dog, rhesus pairwise refs #14970
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 96, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
• src/hg/makeDb/doc/rn6.txt
  • lines changed 44, context: html, text, full: html, text
    adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
    
• src/hg/makeDb/doc/tarSyr2/lastzRuns.txt
  • lines changed 188, context: html, text, full: html, text
    wrapping up the 20-way conservation track refs #15112
    
• src/hg/makeDb/doc/tarSyr2/multiz17way.txt
  • lines changed 4, context: html, text, full: html, text
    wrapping up the 20-way conservation track refs #15112
    
• src/hg/makeDb/doc/tarSyr2/multiz20way.txt
  • lines changed 1590, context: html, text, full: html, text
    tarSyr2 20-way alignment refs #15112
    
  • lines changed 8, context: html, text, full: html, text
    wrapping up the 20-way conservation track refs #15112
    
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added aquChr2 - Golden Eagle refs #15096
    
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    Added aquChr2 - Golden Eagle refs #15096
    
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
  • lines changed 10, context: html, text, full: html, text
    wrapping up 20-way alignment refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/hg38Patch3.ra
  • lines changed 118, context: html, text, full: html, text
    adding patch3 tracks refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra
  • lines changed 1, context: html, text, full: html, text
    wrapping up 20-way alignment refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra
  • lines changed 11, context: html, text, full: html, text
    wrapping up 20-way alignment refs #15413
    
  • lines changed 7, context: html, text, full: html, text
    correct labels on the tracks refs #15413
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    adding patch3 tracks refs #15413
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/cons20way.html
  • lines changed 462, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.17way.ra
  • lines changed 1, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.20way.ra
  • lines changed 103, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
  • lines changed 7, context: html, text, full: html, text
    correct labels on the tracks refs #15413
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    adding 20-way multiz track refs #15112
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v315 final build refs #15164