Commits for hiram

v315_preview2 to v315_base (2015-04-13 to 2015-04-20) v315

• Added aquChr2 - Golden Eagle refs #15096
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• in the pushQ refs #11172
  
  • src/hg/makeDb/doc/chlSab2/fetchChrM.sh - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/doc/chlSab2/initialBuild.txt - lines changed 499, context: html, text, full: html, text
  • src/hg/makeDb/doc/chlSab2/ucscCompositeAgp.pl - lines changed 44, context: html, text, full: html, text
  • src/hg/makeDb/doc/chlSab2/unlocalized.pl - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/doc/chlSab2/unplaced.pl - lines changed 35, context: html, text, full: html, text
• in the pushQ refs #15096
  
  • src/hg/makeDb/doc/aquChr2/initialBuild.txt - lines changed 483, context: html, text, full: html, text
• patch3 for hg38 is loaded refs #15143
  
  • src/hg/makeDb/doc/hg38/hg38Patch3.txt - lines changed 558, context: html, text, full: html, text
• adding ucscToRefSeq name correspondence table for name translation from RefSeq names to UCSC names refs #13673
  
  • src/hg/makeDb/doc/danRer10/initialBuild.txt - lines changed 42, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 96, context: html, text, full: html, text
  • src/hg/makeDb/doc/rn6.txt - lines changed 44, context: html, text, full: html, text
• tarSyr2 20-way alignment refs #15112
  
  • src/hg/makeDb/doc/tarSyr2/multiz20way.txt - lines changed 1590, context: html, text, full: html, text
• adding patch3 tracks refs #15413
  
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch3.ra - lines changed 118, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• wrapping up 20-way alignment refs #15413
  
  • src/hg/makeDb/trackDb/human/hg38/cons20way.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra - lines changed 11, context: html, text, full: html, text
• rebuild of 20-way with corrected mouse, dog, rhesus pairwise refs #14970
  
  • src/hg/makeDb/doc/hg38/multiz20way.txt - lines changed 232, context: html, text, full: html, text
• wrapping up the 20-way conservation track refs #15112
  
  • src/hg/makeDb/doc/tarSyr2/lastzRuns.txt - lines changed 188, context: html, text, full: html, text
  • src/hg/makeDb/doc/tarSyr2/multiz17way.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/tarSyr2/multiz20way.txt - lines changed 8, context: html, text, full: html, text
• adding 20-way multiz track refs #15112
  
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/cons20way.html - lines changed 462, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.20way.ra - lines changed 103, context: html, text, full: html, text
• adding 20-way multiz track refs #15112
  
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.ra - lines changed 2, context: html, text, full: html, text
• adding 20-way multiz track refs #15112
  
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.17way.ra - lines changed 1, context: html, text, full: html, text
• adding phylo images for 20-ways refs #15112 #14970
  
  • src/hg/htdocs/images/phylo/hg38_20way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/images/phylo/tarSyr2_20way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• correctly honor underscores in the names refs #15112 #14970
  
  • src/hg/htdocs/images/phylo/hg38_20way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/images/phylo/tarSyr2_20way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• correct labels on the tracks refs #15413
  
  • src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra - lines changed 7, context: html, text, full: html, text
• correct labels on the tracks refs #15413
  
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.20way.ra - lines changed 7, context: html, text, full: html, text
• v315 final build refs #15164
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v315
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text