Commits for angie

v315_preview to v315_preview2 (2015-04-08 to 2015-04-13) v315

• Better to use hTableExists() as Max pointed out. refs #15126
  
  • src/hg/hgTables/bigBed.c - lines changed 1, context: html, text, full: html, text
• Better to use hTableExists() as Max pointed out. refs #15126
  
  • src/hg/lib/hAnno.c - lines changed 3, context: html, text, full: html, text
• Include defaultPos in dbDb from trackHub::makeDbDbFromAssemblyGenome (so cartJson can find it in dbDbs from trackHubGetDbDbs). refs #14579 note 30
  
  • src/hg/lib/trackHub.c - lines changed 1, context: html, text, full: html, text
• Oops, the actual error message from the CGI was not displayed as intended -- fixed. refs #14579 note 31
  
  • src/hg/js/model/lib/ImModel.js - lines changed 2, context: html, text, full: html, text
• Handle empty groupedTrackDb more gracefully.
  
  • src/hg/js/model/hgIntegrator/hgIntegratorModel.js - lines changed 10, context: html, text, full: html, text
• Libifying trackDbCmpShortLabel so I can use it elsewhere.
  
  • src/hg/hgGenome/import.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTables/correlate.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTables/mainPage.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgVarAnnogrator/hgVarAnnogrator.c - lines changed 8, context: html, text, full: html, text
  • src/hg/inc/trackDb.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 8, context: html, text, full: html, text
• Matt found that an assembly hub with no track groups (e.g. ThorntonHub)
  caused errors in hgIntegrator. Detect that case and make an "All Tracks"
  group if there are no other groups. refs #14579 note 32
  
  • src/hg/lib/cartJson.c - lines changed 53, context: html, text, full: html, text
• ImModel: support custom server error handler in cartDo.
  PositionSearch: if server's error message is only the benign "Sorry,
  couldn't find <blah> in genome", just display it to the user instead
  of treating it as a real error from the server.
  refs #14579
  
  • src/hg/js/model/lib/ImModel.js - lines changed 23, context: html, text, full: html, text
  • src/hg/js/model/lib/PositionSearchMixin.js - lines changed 11, context: html, text, full: html, text