File Changes for hiram

v316_preview2 to v316_base (2015-05-04 to 2015-05-11) v316

• src/hg/inc/versionInfo.h
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    New version number v316
    
• src/hg/makeDb/doc/hg38/multiz100way.txt
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    have initial maf files refs #14560
    
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    loading frames and calculating 4D tree refs #14560
    
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    done with phastCons and phyloP refs #14560
    
• src/hg/makeDb/doc/micMur1.txt
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    liftOver to micMur2 refs #15292
    
• src/hg/makeDb/doc/micMur2/initialBuild.txt
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    beginning build of browser refs #15292
    
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    running up genbank and last tracks refs #15292
    
• src/hg/makeDb/genbank/etc/genbank.conf
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    Added micMur2; refs #15292
    
• src/hg/makeDb/schema/all.joiner
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    adding rules for micMur2 refs #15292
    
• src/hg/makeDb/trackDb/dog/canFam3/trackDb.chainNet.ra
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    override matrix values for tarSyr2 refs #15112
    
• src/hg/makeDb/trackDb/human/hg38/alpha.7way.ra
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    better lables for these N-way tracks on alpha refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/betaPublic.7way.ra
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    better lables for these N-way tracks on alpha refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/cons100way.html
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    first peek at new 100-way refs #14560
    
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    updating to new assembly references from the hg19 set refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
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    fixup dates and asterisk refs #14970
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.100way.ra
  • lines changed 114, context: html, text, full: html, text
    first peek at new 100-way refs #14560
    
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    better lables for these N-way tracks on alpha refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra
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    better lables for these N-way tracks on alpha refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.7way.ra
  • lines changed 11, context: html, text, full: html, text
    better lables for these N-way tracks on alpha refs #14560
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    first peek at new 100-way refs #14560
    
• src/hg/makeDb/trackDb/makefile
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    adding micMur2 to the build refs #15292
    
• src/hg/makeDb/trackDb/mouseLemur/micMur2/description.html
  • lines changed 63, context: html, text, full: html, text
    adding micMur2 to the build refs #15292
    
• src/hg/makeDb/trackDb/mouseLemur/micMur2/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding micMur2 to the build refs #15292
    
• src/hg/makeDb/trackDb/mouseLemur/micMur2/gold.html
  • lines changed 33, context: html, text, full: html, text
    adding micMur2 to the build refs #15292
    
• src/hg/makeDb/trackDb/mouseLemur/micMur2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding micMur2 to the build refs #15292
    
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    add search rule for gold table refs #15292
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.20way.ra
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    add Mm10 and CanFam3 to the chainNet ordering overrides refs #15112
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.chainNet.ra
  • lines changed 12, context: html, text, full: html, text
    add Mm10 and CanFam3 to the chainNet ordering overrides refs #15112
    
• src/utils/qa/weeklybld/buildEnv.csh
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    v316 preview2 refs #15237
    
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    v316 final build refs #15288