Commits for hiram

v316_preview2 to v316_base (2015-05-04 to 2015-05-11) v316

• v316 preview2 refs #15237
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text
• adding micMur2 to the build refs #15292
  
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur2/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur2/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur2/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur2/trackDb.ra - lines changed 8, context: html, text, full: html, text
• beginning build of browser refs #15292
  
  • src/hg/makeDb/doc/micMur2/initialBuild.txt - lines changed 452, context: html, text, full: html, text
• Added micMur2; refs #15292
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 18, context: html, text, full: html, text
• add search rule for gold table refs #15292
  
  • src/hg/makeDb/trackDb/mouseLemur/micMur2/trackDb.ra - lines changed 5, context: html, text, full: html, text
• adding rules for micMur2 refs #15292
  
  • src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text
• running up genbank and last tracks refs #15292
  
  • src/hg/makeDb/doc/micMur2/initialBuild.txt - lines changed 111, context: html, text, full: html, text
• first peek at new 100-way refs #14560
  
  • src/hg/makeDb/trackDb/human/hg38/cons100way.html - lines changed 536, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.100way.ra - lines changed 114, context: html, text, full: html, text
• first peek at new 100-way refs #14560
  
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• better lables for these N-way tracks on alpha refs #14560
  
  • src/hg/makeDb/trackDb/human/hg38/alpha.7way.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/betaPublic.7way.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.100way.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.17way.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.7way.ra - lines changed 11, context: html, text, full: html, text
• liftOver to micMur2 refs #15292
  
  • src/hg/makeDb/doc/micMur1.txt - lines changed 16, context: html, text, full: html, text
• override matrix values for tarSyr2 refs #15112
  
  • src/hg/makeDb/trackDb/dog/canFam3/trackDb.chainNet.ra - lines changed 4, context: html, text, full: html, text
• add Mm10 and CanFam3 to the chainNet ordering overrides refs #15112
  
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.20way.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr2/trackDb.chainNet.ra - lines changed 12, context: html, text, full: html, text
• have initial maf files refs #14560
  
  • src/hg/makeDb/doc/hg38/multiz100way.txt - lines changed 1899, context: html, text, full: html, text
• fixup dates and asterisk refs #14970
  
  • src/hg/makeDb/trackDb/human/hg38/cons20way.html - lines changed 3, context: html, text, full: html, text
• loading frames and calculating 4D tree refs #14560
  
  • src/hg/makeDb/doc/hg38/multiz100way.txt - lines changed 502, context: html, text, full: html, text
• updating to new assembly references from the hg19 set refs #14560
  
  • src/hg/makeDb/trackDb/human/hg38/cons100way.html - lines changed 14, context: html, text, full: html, text
• done with phastCons and phyloP refs #14560
  
  • src/hg/makeDb/doc/hg38/multiz100way.txt - lines changed 498, context: html, text, full: html, text
• v316 final build refs #15288
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v316
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text