File Changes for ceisenhart

v316_preview to v316_preview2 (2015-04-27 to 2015-05-04) v316

• src/oneShot/jsonToTagStorm/jsonToTagStorm.c
  • lines changed 93, context: html, text, full: html, text
    COmmitting latest before Jim starts editing.
    
  • lines changed 54, context: html, text, full: html, text
    C code to convert a .json file to a .tagStorm file, seems to be working.
    
  • lines changed 33, context: html, text, full: html, text
    Added a bit of documentation and increased robustness. Program now accepts multi-lined .json files
    
  • lines changed 12, context: html, text, full: html, text
    Fixing a couple bugs I found, improved robustness a bit as well
    
  • lines changed 3, context: html, text, full: html, text
    replaced stripString with stripChar call as recommended by Jim
    
  • lines changed 5, context: html, text, full: html, text
    Meeting with Jim, expecting some changes to the code
    
  • lines changed 121, context: html, text, full: html, text
    Completely refactored yet again, this time the code uses a tokenizer. Seems to be working and quite robust
    
  • lines changed 14, context: html, text, full: html, text
    Added the makefile. Code now accepts escaped quotes
    
  • lines changed 137, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/oneShot/jsonToTagStorm/jsonToTagStorm.py
  • lines changed 82, context: html, text, full: html, text
    A python program that takes in a single line .json file and converts it to a tagStorm file.
    
  • lines changed 82, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/oneShot/jsonToTagStorm/makefile
  • lines changed 3, context: html, text, full: html, text
    Added the makefile. Code now accepts escaped quotes
    
  • lines changed 3, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/oneShot/jsonToTagStorm/thisCcodeStartedCrashingForNoReason.c
  • lines changed 220, context: html, text, full: html, text
    COmmitting latest before Jim starts editing.
    
  • lines changed 220, context: html, text, full: html, text
    Oops, did not mean to include that.
    
• src/oneShot/tagStormToJson/makefile
  • lines changed 3, context: html, text, full: html, text
    makefile and tagStormToJson, converts tagStorm files to json files. Made more robust
    
  • lines changed 3, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/oneShot/tagStormToJson/tagStormToJson.c
  • lines changed 70, context: html, text, full: html, text
    makefile and tagStormToJson, converts tagStorm files to json files. Made more robust
    
  • lines changed 70, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/tagStorm/jsonToTagStorm/jsonToTagStorm.c
  • lines changed 137, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/tagStorm/jsonToTagStorm/jsonToTagStorm.py
  • lines changed 82, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/tagStorm/jsonToTagStorm/makefile
  • lines changed 3, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/tagStorm/tagStormFromTab/expected.tags
  • lines changed 8, context: html, text, full: html, text
    Some test case files
    
• src/tagStorm/tagStormFromTab/in.tab
  • lines changed 3, context: html, text, full: html, text
    Some test case files
    
• src/tagStorm/tagStormFromTab/makefile
  • lines changed 4, context: html, text, full: html, text
    Some test case files
    
• src/tagStorm/tagStormToJson/makefile
  • lines changed 3, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/tagStorm/tagStormToJson/tagStormToJson.c
  • lines changed 71, context: html, text, full: html, text
    Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
    
• src/utils/bigWigCluster/colorRadialDend.html
  • lines changed 124, context: html, text, full: html, text
    A html file that creates a color coded radial dendrogram from an input .json file