Commits for ceisenhart

v316_preview to v316_preview2 (2015-04-27 to 2015-05-04) v316

• A html file that creates a color coded radial dendrogram from an input .json file
  
  • src/utils/bigWigCluster/colorRadialDend.html - lines changed 124, context: html, text, full: html, text
• A python program that takes in a single line .json file and converts it to a tagStorm file.
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.py - lines changed 82, context: html, text, full: html, text
• COmmitting latest before Jim starts editing.
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 93, context: html, text, full: html, text
  • src/oneShot/jsonToTagStorm/thisCcodeStartedCrashingForNoReason.c - lines changed 220, context: html, text, full: html, text
• Oops, did not mean to include that.
  
  • src/oneShot/jsonToTagStorm/thisCcodeStartedCrashingForNoReason.c - lines changed 220, context: html, text, full: html, text
• C code to convert a .json file to a .tagStorm file, seems to be working.
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 54, context: html, text, full: html, text
• Added a bit of documentation and increased robustness. Program now accepts multi-lined .json files
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 33, context: html, text, full: html, text
• Fixing a couple bugs I found, improved robustness a bit as well
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 12, context: html, text, full: html, text
• replaced stripString with stripChar call as recommended by Jim
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 3, context: html, text, full: html, text
• Some test case files
  
  • src/tagStorm/tagStormFromTab/expected.tags - lines changed 8, context: html, text, full: html, text
  • src/tagStorm/tagStormFromTab/in.tab - lines changed 3, context: html, text, full: html, text
  • src/tagStorm/tagStormFromTab/makefile - lines changed 4, context: html, text, full: html, text
• Meeting with Jim, expecting some changes to the code
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 5, context: html, text, full: html, text
• Completely refactored yet again, this time the code uses a tokenizer. Seems to be working and quite robust
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 121, context: html, text, full: html, text
• makefile and tagStormToJson, converts tagStorm files to json files. Made more robust
  
  • src/oneShot/tagStormToJson/makefile - lines changed 3, context: html, text, full: html, text
  • src/oneShot/tagStormToJson/tagStormToJson.c - lines changed 70, context: html, text, full: html, text
• Added the makefile. Code now accepts escaped quotes
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 14, context: html, text, full: html, text
  • src/oneShot/jsonToTagStorm/makefile - lines changed 3, context: html, text, full: html, text
• Added tagStormToJson code, which converts a tagStorm to a .json file. Used with jsonToTagStorm
  
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.c - lines changed 137, context: html, text, full: html, text
  • src/oneShot/jsonToTagStorm/jsonToTagStorm.py - lines changed 82, context: html, text, full: html, text
  • src/oneShot/jsonToTagStorm/makefile - lines changed 3, context: html, text, full: html, text
  • src/oneShot/tagStormToJson/makefile - lines changed 3, context: html, text, full: html, text
  • src/oneShot/tagStormToJson/tagStormToJson.c - lines changed 70, context: html, text, full: html, text
  • src/tagStorm/jsonToTagStorm/jsonToTagStorm.c - lines changed 137, context: html, text, full: html, text
  • src/tagStorm/jsonToTagStorm/jsonToTagStorm.py - lines changed 82, context: html, text, full: html, text
  • src/tagStorm/jsonToTagStorm/makefile - lines changed 3, context: html, text, full: html, text
  • src/tagStorm/tagStormToJson/makefile - lines changed 3, context: html, text, full: html, text
  • src/tagStorm/tagStormToJson/tagStormToJson.c - lines changed 71, context: html, text, full: html, text