File Changes for hiram

v317_preview2 to v317_base (2015-05-25 to 2015-06-01) v317

• src/hg/inc/versionInfo.h
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    New version number v317
    
• src/hg/makeDb/genbank/etc/align.dbs
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    Added micMur2 - Mouse lemur refs #15292
    
• src/hg/makeDb/genbank/etc/genbank.conf
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    fixup bisBis1 config refs #15388
    
• src/hg/makeDb/genbank/etc/hgwdev.dbs
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    Added micMur2 - Mouse lemur refs #15292
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    ignore augustusGene table nothing to check refs #13088
    
• src/hg/makeDb/trackDb/human/chainNetMicMur1.ra
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    turn of micMur2 chainNet for alpha target leave micMur1 as beta public refs #15292
    
• src/hg/makeDb/trackDb/human/chainNetMicMur2.ra
  • lines changed 15, context: html, text, full: html, text
    turn of micMur2 chainNet for alpha target leave micMur1 as beta public refs #15292
    
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
  • lines changed 15, context: html, text, full: html, text
    turn of micMur2 chainNet for alpha target leave micMur1 as beta public refs #15292
    
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    turn of micMur2 chainNet for alpha target leave micMur1 as beta public refs #15292
    
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 51, context: html, text, full: html, text
    turn of micMur2 chainNet for alpha target leave micMur1 as beta public refs #15292
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    add search rule for augustusGene track refs #13088
    
• src/hg/utils/automation/doAugustus.pl
  • lines changed 14, context: html, text, full: html, text
    auto detect UTR option and manage no partBundles correctly refs #13088
    
• src/hg/utils/automation/doBlastzChainNet.pl
  • lines changed 1, context: html, text, full: html, text
    correct symlink for synNet downloads refs #14560
    
• src/utils/bedToBigBed/tests/makefile
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    fixup expected failing command so its failure code will not bother make refs #15417
    
• src/utils/qa/weeklybld/buildEnv.csh
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    v317 final build