Commits for hiram

v317_preview2 to v317_base (2015-05-25 to 2015-06-01) v317

• auto detect UTR option and manage no partBundles correctly refs #13088
  
  • src/hg/utils/automation/doAugustus.pl - lines changed 14, context: html, text, full: html, text
• fixup bisBis1 config refs #15388
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• ignore augustusGene table nothing to check refs #13088
  
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Added micMur2 - Mouse lemur refs #15292
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text
• add search rule for augustusGene track refs #13088
  
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 7, context: html, text, full: html, text
• fixup expected failing command so its failure code will not bother make refs #15417
  
  • src/utils/bedToBigBed/tests/makefile - lines changed 1, context: html, text, full: html, text
• turn of micMur2 chainNet for alpha target leave micMur1 as beta public refs #15292
  
  • src/hg/makeDb/trackDb/human/chainNetMicMur1.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetMicMur2.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetPrimate.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text
• correct symlink for synNet downloads refs #14560
  
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 1, context: html, text, full: html, text
• v317 final build
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v317
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text