Commits for kate

v317_preview2 to v317_base (2015-05-25 to 2015-06-01) v317

• Add needed include
  
  • src/hg/inc/hgBam.h - lines changed 4, context: html, text, full: html, text
• 1. Add -test option to use genome-test spec file. 2. Remove unneeded errCatch (from code review). 3. Simplify code org (delibify unshared code); bye to lib/trackHubCheck.c. refs #10015
  
  • src/hg/inc/trackHub.h - lines changed 34, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/trackHubCheck.c - lines changed 494, context: html, text, full: html, text
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 562, context: html, text, full: html, text
• 1. Get version from doc. 2. Fix err messages. refs #10015
  
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 47, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.js - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.html - lines changed 44, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 90, context: html, text, full: html, text
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 97, context: html, text, full: html, text
• Merge branch 'tdbVersion'
  
• Fix to handling of deprecated settings. refs #10015
  
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 9, context: html, text, full: html, text
• Merge branch 'tdbVersion'
  
• Fix test on doc type. Commit v0 version. refs #10015
  
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.js - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v0.html - lines changed 785, context: html, text, full: html, text