File Changes for braney

v316_base to v317_preview (2015-05-11 to 2015-05-18) v317

• src/hg/genePredToGtf/genePredToGtf.c
  • lines changed 6, context: html, text, full: html, text
    make genePredToGtf put out the right exon number for start and stop
    codons refs #15216
    
• src/hg/genePredToGtf/tests/expected/basicSimpleTest.gtf
  • lines changed 9, context: html, text, full: html, text
    expected unit test output for genePredToGtf fix refs #15216
    
• src/hg/genePredToGtf/tests/expected/basicTest.gtf
  • lines changed 14, context: html, text, full: html, text
    expected unit test output for genePredToGtf fix refs #15216
    
• src/hg/genePredToGtf/tests/expected/honorTest.gtf
  • lines changed 14, context: html, text, full: html, text
    expected unit test output for genePredToGtf fix refs #15216
    
• src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf
  • lines changed 9, context: html, text, full: html, text
    expected unit test output for genePredToGtf fix refs #15216
    
• src/hg/genePredToGtf/tests/expected/utrTest.gtf
  • lines changed 14, context: html, text, full: html, text
    expected unit test output for genePredToGtf fix refs #15216
    
• src/hg/hgGene/hgGene.c
  • lines changed 1, context: html, text, full: html, text
    remove a line of code I recently added that crashes rn4 RGD Gene (no RM)
    
• src/hg/lib/knownBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add knownBlastTab.as so description will make it into the table browser
    refs #15145
    
  • lines changed 1, context: html, text, full: html, text
    knownGeneMrna.as and knownToVisiGene.as to get descriptions into table
    browser #15145
    
• src/hg/lib/knownGeneMrna.as
  • lines changed 6, context: html, text, full: html, text
    knownGeneMrna.as and knownToVisiGene.as to get descriptions into table
    browser #15145
    
• src/hg/lib/knownToVisiGene.as
  • lines changed 7, context: html, text, full: html, text
    knownGeneMrna.as and knownToVisiGene.as to get descriptions into table
    browser #15145
    
• src/hg/makeDb/trackDb/human/hg38/knownGene.ra.beta
  • lines changed 2, context: html, text, full: html, text
    fix a problem with new name for UCSC Genes leaking out to the RR (no
    redmine)
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra
  • lines changed 1, context: html, text, full: html, text
    take out snpTable from hg38 20way for now