Commits for braney
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v316_base to v317_preview (2015-05-11 to 2015-05-18) v317
- remove a line of code I recently added that crashes rn4 RGD Gene (no RM)
- add knownBlastTab.as so description will make it into the table browser
refs #15145
- src/hg/lib/knownBlastTab.as - lines changed 17, context: html, text, full: html, text
- knownGeneMrna.as and knownToVisiGene.as to get descriptions into table
browser #15145
- src/hg/lib/knownBlastTab.as - lines changed 1, context: html, text, full: html, text
- src/hg/lib/knownGeneMrna.as - lines changed 6, context: html, text, full: html, text
- src/hg/lib/knownToVisiGene.as - lines changed 7, context: html, text, full: html, text
- fix a problem with new name for UCSC Genes leaking out to the RR (no
redmine)
- src/hg/makeDb/trackDb/human/hg38/knownGene.ra.beta - lines changed 2, context: html, text, full: html, text
- make genePredToGtf put out the right exon number for start and stop
codons refs #15216
- src/hg/genePredToGtf/genePredToGtf.c - lines changed 6, context: html, text, full: html, text
- expected unit test output for genePredToGtf fix refs #15216
- src/hg/genePredToGtf/tests/expected/basicSimpleTest.gtf - lines changed 9, context: html, text, full: html, text
- src/hg/genePredToGtf/tests/expected/basicTest.gtf - lines changed 14, context: html, text, full: html, text
- src/hg/genePredToGtf/tests/expected/honorTest.gtf - lines changed 14, context: html, text, full: html, text
- src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf - lines changed 9, context: html, text, full: html, text
- src/hg/genePredToGtf/tests/expected/utrTest.gtf - lines changed 14, context: html, text, full: html, text
- take out snpTable from hg38 20way for now
- src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra - lines changed 1, context: html, text, full: html, text
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