File Changes for hiram

v318_preview2 to v318_base (2015-06-15 to 2015-06-22) v318

• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v318
    
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 29, context: html, text, full: html, text
    update score column on the cloneEnd tables refs #13713
    
• src/hg/makeDb/doc/hg38/stsMap.txt
  • lines changed 524, context: html, text, full: html, text
    begin alignment of STS markers to hg38 refs #15524
    
• src/hg/makeDb/doc/manPen1/initialBuild.txt
  • lines changed 538, context: html, text, full: html, text
    ready for downloads refs #15515
    
• src/hg/makeDb/doc/panPan1.txt
  • lines changed 31, context: html, text, full: html, text
    add gold/assembly track search rule refs #8231
    
  • lines changed 11, context: html, text, full: html, text
    add augustus gene construction process refs #13088
    
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added ce11 - C. elegans WS245 refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    Added manPen1 - Pangolin/Manis pentadactyla (javanica)refs #15515
    
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 2, context: html, text, full: html, text
    Added ce11 - C. elegans WS245 refs #15209
    
  • lines changed 1, context: html, text, full: html, text
    Added manPen1 - Pangolin/Manis pentadactyla (javanica)refs #15515
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 11, context: html, text, full: html, text
    Added manPen1 - Chinese Pangolin/Manis pentadactyl arefs #15515
    
• src/hg/makeDb/trackDb/bonobo/panPan1/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    adding search rule for gold/assembly table refs #8231
    
• src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra
  • lines changed 39, context: html, text, full: html, text
    grouping tracks for better visibility control refs #13713
    
• src/hg/makeDb/trackDb/human/cloneEndSuper.html
  • lines changed 44, context: html, text, full: html, text
    adding information from previous BAC Ends track refs #13713
    
  • lines changed 41, context: html, text, full: html, text
    cleaning up the comments from the bacEnd track description refs #13713
    
  • lines changed 22, context: html, text, full: html, text
    adding links from library name to NCBI clone library information refs #13713
    
  • lines changed 6, context: html, text, full: html, text
    add the counts of dropped ends and multiple mappings to the table refs #13713
    
  • lines changed 1, context: html, text, full: html, text
    grammer correction refs #13713
    
• src/hg/stsMarkers/headchg
  • lines changed 6, context: html, text, full: html, text
    better to use /usr/bin/env perl instead of /usr/local/bin/perl refs #15524
    
• src/hg/stsMarkers/sorttbl
  • lines changed 5, context: html, text, full: html, text
    better to use /usr/bin/env perl instead of /usr/local/bin/perl refs #15524
    
• src/hg/stsMarkers/uniqtbl
  • lines changed 6, context: html, text, full: html, text
    better to use /usr/bin/env perl instead of /usr/local/bin/perl refs #15524
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v318 final build refs #15560