Commits for hiram

v318_preview2 to v318_base (2015-06-15 to 2015-06-22) v318

• begin alignment of STS markers to hg38 refs #15524
  
  • src/hg/makeDb/doc/hg38/stsMap.txt - lines changed 524, context: html, text, full: html, text
• adding search rule for gold/assembly table refs #8231
  
  • src/hg/makeDb/trackDb/bonobo/panPan1/trackDb.ra - lines changed 7, context: html, text, full: html, text
• add gold/assembly track search rule refs #8231
  
  • src/hg/makeDb/doc/panPan1.txt - lines changed 31, context: html, text, full: html, text
• add augustus gene construction process refs #13088
  
  • src/hg/makeDb/doc/panPan1.txt - lines changed 11, context: html, text, full: html, text
• better to use /usr/bin/env perl instead of /usr/local/bin/perl refs #15524
  
  • src/hg/stsMarkers/headchg - lines changed 6, context: html, text, full: html, text
  • src/hg/stsMarkers/sorttbl - lines changed 5, context: html, text, full: html, text
  • src/hg/stsMarkers/uniqtbl - lines changed 6, context: html, text, full: html, text
• adding information from previous BAC Ends track refs #13713
  
  • src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 44, context: html, text, full: html, text
• grouping tracks for better visibility control refs #13713
  
  • src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra - lines changed 39, context: html, text, full: html, text
• update score column on the cloneEnd tables refs #13713
  
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 29, context: html, text, full: html, text
• cleaning up the comments from the bacEnd track description refs #13713
  
  • src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 41, context: html, text, full: html, text
• adding links from library name to NCBI clone library information refs #13713
  
  • src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 22, context: html, text, full: html, text
• add the counts of dropped ends and multiple mappings to the table refs #13713
  
  • src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 6, context: html, text, full: html, text
• grammer correction refs #13713
  
  • src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 1, context: html, text, full: html, text
• Added ce11 - C. elegans WS245 refs #15209
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text
• Added manPen1 - Pangolin/Manis pentadactyla (javanica)refs #15515
  
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• ready for downloads refs #15515
  
  • src/hg/makeDb/doc/manPen1/initialBuild.txt - lines changed 538, context: html, text, full: html, text
• Added manPen1 - Chinese Pangolin/Manis pentadactyl arefs #15515
  
  • src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text
• v318 final build refs #15560
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v318
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text