Commits for jcasper

v319_preview to v319_preview2 (2015-06-29 to 2015-07-06) v319

• Adding hg38-specific primate chain/net page, so hg19 values aren't being reported where they're not appropriate
  
  • src/hg/makeDb/trackDb/human/hg38/primateChainNet.html - lines changed 183, context: html, text, full: html, text
• Adding CGI menubar to many static pages, refs #15389
  
  • src/hg/htdocs/FAQ/FAQblat.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQcite.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQcustom.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQdisplay.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQdownloads.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQformat.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQlicense.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQlink.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQmaillist.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQreleases.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQtables.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQtracks.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/index.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/Neandertal/index.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/403.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/404.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/500.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/cvs.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/git.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/index.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/jk-install.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/admin/mirror.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/cite.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/conditions.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/contacts.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/certificates/certificate_hg15.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/certificates/certificate_hg16.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/certificates/index.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/credits.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/datorg.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/gbdDescriptions.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/gbdDescriptionsOld.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/axt.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bam.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bedgraph.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigBed.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigGenePred.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigWig.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/blatSpec.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/chain.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/chimera.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/customColumn.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/customTrack.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/fileSearch.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/ftp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/gbib.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/geneSearchBox.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/genomeEuro.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/haplotypes.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hg18ToHg19LiftOver.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgBamTrackHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgBaseLabel.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgCodonColoring.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgCodonColoringMrna.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgGenomeHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgIndelDisplay.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgNearHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgRegMotifHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgSessionHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTablesHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTextHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTracksHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStart.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/image.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/index.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/iupac.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/liftOver.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/multiView.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/mysql.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/net.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/phastCons.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/qValue.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/query.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/sessions.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDescriptions.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackSearch.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trix.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/twoBit.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/vcf.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/wiggle.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/hgText.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/hgTracks.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/labs.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/mapPlots/RHguide.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/pubs.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/stats.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/index.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/jobs.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/kc.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/knownIssues.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/license/index.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/mirror.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/staff.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/template.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/training/index.html - lines changed 20, context: html, text, full: html, text
  • src/hg/htdocs/training/vids/index.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/util.html - lines changed 5, context: html, text, full: html, text
• A few more hard-coded menus to fix, refs #15389
  
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 14, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v0.html - lines changed 14, context: html, text, full: html, text
• A few edits suggested by Donna
  
  • src/hg/makeDb/trackDb/human/hg38/primateChainNet.html - lines changed 12, context: html, text, full: html, text
• Moving from soft link process to one more file for release of trackDb version updates
  
  • src/hg/htdocs/goldenPath/help/trackDb/makefile - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.html - lines changed 1, context: html, text, full: html, text