File Changes for braney

v320_base to v321_preview (2015-08-03 to 2015-08-21) v321

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 2, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 8, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
  • lines changed 32, context: html, text, full: html, text
    do a better job of bigPsl support (query gaps) #14241
    
  • lines changed 2, context: html, text, full: html, text
    more polish for bigPsl support. hgc alignments work now #14241
    
• src/hg/hgTracks/cds.c
  • lines changed 5, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/hgTracks/hgTracks.c
  • lines changed 5, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/hgTracks/hgTracks.h
  • lines changed 1, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/hgTracks/mafTrack.c
  • lines changed 2, context: html, text, full: html, text
    some tweaks to introduce mafSnp mode to hg38 100way #14277
    
• src/hg/hgTracks/mafTrack.h
  • lines changed 9, context: html, text, full: html, text
    some tweaks to introduce mafSnp mode to hg38 100way #14277
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 9, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/hgTracks/wigMafTrack.c
  • lines changed 13, context: html, text, full: html, text
    some tweaks to introduce mafSnp mode to hg38 100way #14277
    
• src/hg/hgc/hgc.c
  • lines changed 46, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
  • lines changed 1, context: html, text, full: html, text
    small bigPsl fix #14241
    
  • lines changed 75, context: html, text, full: html, text
    more polish for bigPsl support. hgc alignments work now #14241
    
• src/hg/inc/bigPsl.h
  • lines changed 88, context: html, text, full: html, text
    left out bigPsl.c in my earlier bigPsl check in. #14241
    
• src/hg/js/ajax.js
  • lines changed 2, context: html, text, full: html, text
    fix regex for hgsid to match current hgsid format (now
    number_alphanumber whereas it used to just be a number ) #15820
    
• src/hg/lib/bigPsl.as
  • lines changed 6, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/lib/bigPsl.c
  • lines changed 336, context: html, text, full: html, text
    left out bigPsl.c in my earlier bigPsl check in. #14241
    
  • lines changed 7, context: html, text, full: html, text
    more polish for bigPsl support. hgc alignments work now #14241
    
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/lib/trackDbCustom.c
  • lines changed 1, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 37, context: html, text, full: html, text
    a couple of test tracks using bigPsl #14241
    
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 35, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/utils/bigPslToPsl/bigPslToPsl.c
  • lines changed 61, context: html, text, full: html, text
    more polish for bigPsl support. hgc alignments work now #14241
    
• src/hg/utils/bigPslToPsl/makefile
  • lines changed 3, context: html, text, full: html, text
    more polish for bigPsl support. hgc alignments work now #14241
    
• src/hg/utils/pslToBigPsl/makefile
  • lines changed 4, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
• src/hg/utils/pslToBigPsl/pslToBigPsl.c
  • lines changed 289, context: html, text, full: html, text
    first cut at bigPsl support in the browser. #14241
    
  • lines changed 5, context: html, text, full: html, text
    more polish for bigPsl support. hgc alignments work now #14241
    
• src/lib/basicBed.c
  • lines changed 1, context: html, text, full: html, text
    increase a number that causes beds with more than 1024 blocks to not
    validate, even though they work fine after validation #14241