Commits for kent
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v321_preview to v321_preview2 (2015-08-10 to 2015-08-17) v321
- Improving documentation a little.
- Removing some unused code.
- src/jkOwnLib/ffSeedExtend.c - lines changed 22, context: html, text, full: html, text
- Fixing fastMap bogus double-sided gaps redmine #15317
- src/jkOwnLib/gfBlatLib.c - lines changed 2, context: html, text, full: html, text
- Bumping version number
- Starting to make file relationship tracker.
- src/hg/cirm/cdw/inc/cdwStep.h - lines changed 288, context: html, text, full: html, text
- src/hg/cirm/cdw/lib/cdwStep.as - lines changed 38, context: html, text, full: html, text
- src/hg/cirm/cdw/lib/cdwStep.c - lines changed 640, context: html, text, full: html, text
- src/hg/cirm/cdw/lib/makefile - lines changed 2, context: html, text, full: html, text
- Starting to make file relationship tracker.
- src/hg/cirm/cdw/lib/cdwStep.sql - lines changed 47, context: html, text, full: html, text
- Command line utility to load a cdwStepDef.
- src/hg/cirm/cdw/cdwAddStep/cdwAddStep.c - lines changed 46, context: html, text, full: html, text
- src/hg/cirm/cdw/cdwAddStep/makefile - lines changed 4, context: html, text, full: html, text
- Program that helps load Snyderome file graph seems to work for WGS data.
- src/hg/cirm/cdw/oneShot/cdwSnyderomeStepLink/cdwSnyderomeStepLink.c - lines changed 139, context: html, text, full: html, text
- src/hg/cirm/cdw/oneShot/cdwSnyderomeStepLink/makefile - lines changed 4, context: html, text, full: html, text
- Moving from oneShot to wrangling directory
- src/hg/cirm/cdw/oneShot/cdwSnyderomeStepLink/cdwSnyderomeStepLink.c - lines changed 139, context: html, text, full: html, text
- src/hg/cirm/cdw/oneShot/cdwSnyderomeStepLink/makefile - lines changed 4, context: html, text, full: html, text
- src/hg/cirm/cdw/wrangle/cdwSnyderomeStepLink/cdwSnyderomeStepLink.c - lines changed 139, context: html, text, full: html, text
- src/hg/cirm/cdw/wrangle/cdwSnyderomeStepLink/makefile - lines changed 4, context: html, text, full: html, text
- Making help text not appear as XML to the browser.
- Fixing crash on fetching ctgPos2 features.
- Rearranging test directory as we add more.
- src/isPcr/isPcr/tests/input/in.fa - lines changed 2001, context: html, text, full: html, text
- src/isPcr/isPcr/tests/input/in.primers - lines changed 1, context: html, text, full: html, text
- src/isPcr/isPcr/tests/input/testFlip.in - lines changed 1, context: html, text, full: html, text
- src/isPcr/isPcr/tests/simple/in.fa - lines changed 2001, context: html, text, full: html, text
- src/isPcr/isPcr/tests/simple/in.primers - lines changed 1, context: html, text, full: html, text
- src/isPcr/isPcr/tests/simple/testFlip.in - lines changed 1, context: html, text, full: html, text
- Think I fixed #15643
- src/jkOwnLib/gfPcrLib.c - lines changed 9, context: html, text, full: html, text
- Removing some encode3 stuff from build.
- Improving opening module level comment.
- Adding d3pie.js 3rd party module for current CIRM use, and colorPicker in anticipation of future use.
- Adding style to support a color picker jquery widget.
- src/hg/htdocs/style/makefile - lines changed 2, context: html, text, full: html, text
- Changing image on main page and bumping version number. Adding color picker widget to test page.
- src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 21, context: html, text, full: html, text
- Fixing simple merge conflict.
- Initial cut of quake brain PNAS paper metadata.
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 3944, context: html, text, full: html, text
- Adding cell_type field, access field, and starting to unpack age-related fields from GEO tag.
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 544, context: html, text, full: html, text
- First cut of the pipeline description.
- src/hg/cirm/quakeLab/quakeBrainGeo1/quakeRnaPipeline2.txt - lines changed 1, context: html, text, full: html, text
- Unpacking GEO_Sample_age into age/age-units/life_stage fields
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 42, context: html, text, full: html, text
- Removing extranious third level GEO_Sample_c1_chip_id tag
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 89, context: html, text, full: html, text
- Removing a bunch of uninformative or incorrect GEO fields.
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 22, context: html, text, full: html, text
- Adding donor and cell_count tag. Reworking body_part tag to be at finer level. Getting rid of some GEO tags that contained no new info.
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 36, context: html, text, full: html, text
- Removing now redundand GEO_Sample_cell_type.
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 434, context: html, text, full: html, text
- Checking in program generated manifest.
- src/hg/cirm/quakeLab/quakeBrainGeo1/manifest.txt - lines changed 933, context: html, text, full: html, text
- Adding # to first line
- src/hg/cirm/quakeLab/quakeBrainGeo1/manifest.txt - lines changed 1, context: html, text, full: html, text
- Fixed age_units/age_unit typo
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 16, context: html, text, full: html, text
- Adding div option.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 72, context: html, text, full: html, text
- Making it so that all tags starting with 'GEO_' are allowed. Also added cell_type, submission_date, and update_date to the allowed tags.
- src/hg/cirm/cdw/lib/cdwValid.c - lines changed 4, context: html, text, full: html, text
- Adding data_set_id tag
- src/hg/cirm/quakeLab/quakeBrainGeo1/meta.txt - lines changed 1, context: html, text, full: html, text
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